GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:52:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Populus deltoides APETALA-like protein AP1 mRNA, complete cds.
AY515153.1:693-710
TCTTTTATGCTGCCACAAGCACAACCTCCA693CTGCAGCCGTCGATGCTATCACATCCTCCACCAACTCTAGGTGGCAGT
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:80948191-80948208
GATATCAACCCTTGATTTCGGTTCGAGAAT80948191CTGCAGCCGTCGATGCTAGTAATTTGTGTGTTTCATTTGGGCCTCCGT
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:92943226-92943243
GATATCAACCCTTGATTTCGGTTCGAGAAT92943226CTGCAGCCGTCGATGCTAGTAATTTGTGTGTTTCATTTGGGCCTCCGT
Populus nigra genome assembly, chromosome: 13.
OX637684.1:11648636-11648653
TCTTTTATGCCACCACAAGCACAACCTCCA11648636CTGCAGCCGTCGATGCTATCACATCCTCCACCAACTATAGGGTATGCT
Leishmania major breed Culture 1 isolate JRCGR_LM-01 chromosome 8.
CP086031.1:109307-109324
TTGCCTGAGGGTACCCCGGTGATCGAGAAG109307CTGCAGCCGTCGATGCTAGTGCCGGAAATGATGCCCTACATCGACGGT
Leishmania tarentolae isolate M2 chromosome 8.
CP119832.1:103758-103775
CTGCCTGAGGGTACCCCGGTGATCGAGAAA103758CTGCAGCCGTCGATGCTAGTGCCAGAAATGATGCCCTACATCGACGGT
Leishmania major strain Friedlin complete genome, chromosome 8.
FR796404.1:109307-109324
TTGCCTGAGGGTACCCCGGTGATCGAGAAG109307CTGCAGCCGTCGATGCTAGTGCCGGAAATGATGCCCTACATCGACGGT
Agrochola circellaris genome assembly, chromosome: 16.
OU611855.1:14824514-14824531
CCAGCGGCACGTTGCCGAGGGCAGAGGCAA14824514CTGCAGCCGTCGATGCTAGTTGGCGTCAGCCGTAGACTCGTCGGCAGG
Leishmania major strain Friedlin genome assembly, chromosome: 8.
OU755542.1:108676-108693
TTGCCTGAGGGTACCCCGGTGATCGAGAAG108676CTGCAGCCGTCGATGCTAGTGCCGGAAATGATGCCCTACATCGACGGT
Alentia gelatinosa genome assembly, chromosome: 1.
OX465579.1:45614423-45614440
ATCTATCTTCAAAGTCTTTGATCTTTTTGT45614423CTGCAGCCGTCGATGCTATTTTGAAGGTCCATGTCTTCCATGTGAGTG
Oligia fasciuncula genome assembly, chromosome: 11.
OY720397.1:16255483-16255500
GTGTGCATACACACGAGCGACACGCGACAA16255483CTGCAGCCGTCGATGCTAGTCGACGACTGCCGTCGACGAGTGTCGACA
F066P33.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F066P33 3', mRNA sequence.
CK091252.1:423-440
ACTGCCACCTATAGTTGGTGGAGGATGTGA423TAGCATCGACGGCTGCAGTGGAGGTTGTGCTTGTGGTAGCATAAAAGA
F070P21.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F070P21 3', mRNA sequence.
CK091288.1:423-440
ACTGCCACCTATAGTTGGTGGAGGATGTGA423TAGCATCGACGGCTGCAGTGGAGGTTGTGCTTGTGGTAGCATAAAAGA
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737634.1:454784514-454784531
CCAGTGGCAGCATGCTATCAATCCATGCCC454784514TAGCATCGACGGCTGCAGGATCAATGAGAAAGAATATGAATAGGGTTG
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737656.1:492562207-492562224
CCAGTAGCAGCATGCTATCAATCCATGCCC492562207TAGCATCGACGGCTGCAGGATCAATGAGGAAGAATATGAATAGGGTTG
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737663.1:508632311-508632328
CCAGTGGCAGCATGCTATCAATCCATGCCC508632311TAGCATCGACGGCTGCAGGATCAATGAGAAAGAATATGAATAGGGTTG
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737875.1:482652261-482652278
CCAGTGGCAGCATGCTATCAATCCATGCCC482652261TAGCATCGACGGCTGCAGGATCAATGAGAAAGAATATGAATAGGGTTG
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737889.1:479695906-479695923
CCAGTGGCAGCATGCTATCAATCCATGCCC479695906TAGCATCGACGGCTGCAGGATCAATGAGAAAGAATATGAATAGGGTTG
Anopheles maculipalpis genome assembly, chromosome: 2.
OX030895.1:62824692-62824709
TCACGAGTGGTTCCATAACAGTGCTTTTTA62824692TAGCATCGACGGCTGCAGTGAGCGCAGCTTGGAAGCCAACCTGCATAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCAGCCGTCGATGCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCAGCCGTCGATGCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.137 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCAGCCGTCGATGCTA&k=0&no_gap=0&offset=0&limit=50
0.285 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCATCGACGGCTGCAG&k=0&no_gap=0&offset=0&limit=39
0.290 | 0.005 | cgi_end;

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