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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:01:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens isolate NA24385 chromosome 21.
CP139521.1:33245491-33245509
CAGCCTGGATCCACCACAGCCGTGTGAAAC33245491CTGCAGCTGCTGAAACTGGGGAGGCAAAACCGAGCCCAGACAACTCCTG
Homo sapiens isolate NA24385 chromosome 21.
CP139544.1:30263467-30263485
CAGCCTGGATCCACCACAGCCGTGTGAAAC30263467CTGCAGCTGCTGAAACTGGGGAGGCAAAACCGAGCCCAGACAACTCCTG
Pongo pygmaeus L1CAM mRNA for L1 cell adhesion molecule, partial cds.
AB102655.1:883-901
CGTGTCACCTACCAGAACCACAACAAAACC883CTGCAGCTGCTGAAACTGGGCGAGGAGGATGATGGCGAGTACCGCTGCC
Pongo pygmaeus isolate ORG01 L1 cell adhesion molecule (L1CAM) gene, partial cds.
DQ173591.1:283-301
CGTGTCACCTACCAGAACCACAACAAAACC283CTGCAGCTGCTGAAACTGGGCGAGGAGGATGATGGCGAGTACCGCTGCC
Sciurus carolinensis genome assembly, chromosome: 12.
LR738602.1:73716026-73716044
TCACACGACAGAGTCAGCCTGGCGAAGTCT73716026CTGCAGCTGCTGAAACTGGACATGGGACAGAAACACAGTCATCATTGTT
Sciurus vulgaris genome assembly, chromosome: 12.
LR738623.1:69316701-69316719
TCACACGACAGAGTCAGCCTGGTGAAGTCT69316701CTGCAGCTGCTGAAACTGGACATGGGACAGCAACACAGTCATCATTGTT
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:91962971-91962989
AGAACGTCTTGGCAGCCAGTCCTAATGGTC91962971CTGCAGCTGCTGAAACTGGGCAGACAAGAAAGCTGAGCCAAGCACACCC
Capricornis sumatraensis isolate serow.1 chromosome 7.
CP135633.1:51248217-51248235
CCCAGGAACTACAACCACTGGGCCAGTGTG51248217CTGCAGCTGCTGAAACTGGCATGCCCTAGAGCTTCTGGTTCACAACAAG
Cervus elaphus genome assembly, chromosome: 17.
OU343094.1:48677879-48677897
CCCAGGAAATACAACCGCTGGGCCTCCGTG48677879CTGCAGCTGCTGAAACTGGGATGCCCTAGAGCTCCTGGTTCACAACTAG
Lagenorhynchus albirostris genome assembly, chromosome: 13.
OX459085.1:78556457-78556475
GGTGTGGGCTGGTGGGACAGAGGGAAACCT78556457CTGCAGCTGCTGAAACTGGGGGTCTGTCTCCTCTTACAGATGTTTCCCA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 17.
OX459953.2:48488301-48488319
AGCCCAGGAAATACAACCGCTGGGCCTCTG48488301CTGCAGCTGCTGAAACTGGCAGGCCCTAGAGCTCCTGGTTCACAACTAG
Delphinus delphis genome assembly, chromosome: 12.
OX465338.1:51503367-51503385
GGTGTGGGCTGGTGGGACAGAGGGAAACCT51503367CTGCAGCTGCTGAAACTGGGGGTCTGTCTCCTCTTACAGATGTTTCCCA
Balaenoptera acutorostrata genome assembly, chromosome: 12.
OX465362.1:83386751-83386769
GGTGTGGGCTGGTGGGACAGAGGGAAACCT83386751CTGCAGCTGCTGAAACTGGGGGCCTGTCTCCTCTTAGAGACATTTCCCG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 18.
OX596102.1:47882787-47882805
AGCCCAGGAAATACAACCGCTGGGCCTCTG47882787CTGCAGCTGCTGAAACTGGCAGGCCCTAGAGCTCCTGGTTCACAACTAG
Stenella coeruleoalba genome assembly, chromosome: 13.
OX596398.1:79206849-79206867
GGTGTGGGCTGGTGGGACAGAGGGAAACCT79206849CTGCAGCTGCTGAAACTGGGGGTCTGTCTCCTCTTACGGATGTTTCCCA
Globicephala melas genome assembly, chromosome: 12.
OY734051.1:79337612-79337630
GGTGTGGGCTGGTGGGACAGAGGGAAACCT79337612CTGCAGCTGCTGAAACTGGGGGTCTGTCTCCTCTTACAGATGTTTCCCA
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:94328622-94328640
AGAACGTCTTGGCAGCCAGTCCTAATGGTC94328622CTGCAGCTGCTGAAACTGGGCAGACAAGAAAGCTGAGCCAAGCACACCC
Agkistrodon contortrix clone E33DIFJ02GMSH4 microsatellite sequence.
GQ185746.1:108-126
CCTCCTCCTCCATCTATGGGGCCGAGCGCC108CTGCAGCTGCTGAAACTGGAGCCCTCTCAGGGGACAAGTGTCTTCCCTG
Gouania willdenowi genome assembly, chromosome: 11.
LR131984.1:25337020-25337038
AGCCACCAGAGCCAGAACCTGAAGCCGCCA25337020CTGCAGCTGCTGAAACTGGACCTGCATCCTTGTCTGTATCTGGTTCTGC
Salarias fasciatus genome assembly, chromosome: 13.
LR597448.1:24995255-24995273
AGTAAGCCATCTTGGCTCGGTCTGGCGCCT24995255CTGCAGCTGCTGAAACTGGGAGTTCTGGTTTCATGTCTTTGAGTAAATA
Accipiter gentilis genome assembly, chromosome: 2.
OV839362.1:17257973-17257991
GCAGAACATTGCAAGATTGGGAGCTGACCT17257973CTGCAGCTGCTGAAACTGGTATTTGTACCAGTTTCACTTTCACAGATTA
Telmatherina bonti genome assembly, chromosome: 18.
OW121838.1:9214863-9214881
AGCCACGTTTTTCTGCTCCATCCTATGAGC9214863CTGCAGCTGCTGAAACTGGATCTGCAGGGGGTCACGGCCATGTTCTTCC
Haliaeetus albicilla genome assembly, chromosome: 3.
OX381638.1:39783439-39783457
GCAGAACATTGCAAGACTGGGAGCTGACCT39783439CTGCAGCTGCTGAAACTGGTATTTGTACCAGTTTCACTTTCACAGATTA
Melanostigma gelatinosum genome assembly, chromosome: 17.
OX456514.1:11843168-11843186
TGACATACACTGACACTGCTCAGGAATATG11843168CTGCAGCTGCTGAAACTGGAGATAAAAGTTCCAATTGAATTGGTGGGTG
Eutrigla gurnardus genome assembly, chromosome: 22.
OY741285.1:6433448-6433466
CGAATGATCAGCTTCTCAAAGTCTCTTCCA6433448CTGCAGCTGCTGAAACTGGTGGCGCCACTACAGGGAAGCAGGATAAACC
Sardina pilchardus genome assembly, chromosome: 5.
OY974090.1:16058285-16058303
TACAGTAATAGACAAACTCATCCACTCATT16058285CTGCAGCTGCTGAAACTGGCTTAAGGTTCTTTGTTTACTTATTCTGATT
Chroicocephalus ridibundus genome assembly, chromosome: 2.
OZ001734.1:44295789-44295807
GCATGGGACAAAGTTGCCAAAATCCTAGTC44295789CTGCAGCTGCTGAAACTGGAAAGGAGGCAGACTCCGATTTTAGGCAAAG
MAG: Dehalococcoidia bacterium isolate bin708 chromosome.
CP070676.1:1089712-1089730
CTTCACCTTCTTCAGGATCAACGTCGATTG1089712CTGCAGCTGCTGAAACTGGCACCGCTGGTATTGCCAGCATTAGTGTCAG
TSA: Pyrus pyrifolia mRNA, contig: contig_37923unknown.
FX433441.1:310-328
TAGAAGAGAAGCAGAGAGATGACTGCAGAG310CTGCAGCTGCTGAAACTGGCATGGTTCTTTGGAGAGAGAGAGAGAGAGA
TSA: Hynobius retardatus mRNA, contig: comp626291_c0_seq1.
LE213007.1:328-346
AACATCTGCCTTTAACAGGCTGAAACTGGC328CTGCAGCTGCTGAAACTGGTTAGCAAATGAACGATCCAATGACTCATTG
Sus scrofa BES.
CR901802.1:78-96
AGAACGTCTTGGCAGCCAGTCCTAATGGTC78CTGCAGCTGCTGAAACTGGGCAGACAAGAAAGCTGAGCCAAGCACACCC
Metarhizium brunneum strain 4556 chromosome 1, complete sequence.
CP058932.1:8100529-8100547
GACGCCAGTCTGTGCAATGGCCAGAAGAGT8100529CTGCAGCTGCTGAAACTGGAGCAGGGCATTGATGTTGAAGGTGCCGACG
Theobroma cacao isolate Sca6 chromosome 10.
CP139291.1:5971362-5971380
AATAGTGCTTTCCAAGTTTTTATGTGATTC5971362CTGCAGCTGCTGAAACTGGAGCTCAAGATTCCTGTTCTCTGCATGCAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:40123232-40123250
TAGAAGAGAAGCAGAGAGATGACTGCAGAG40123232CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36825568-36825586
TAGAAGAGAAGCAGAGAGATGACTGCAGAG36825568CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Theobroma cacao genome assembly, chromosome: X.
LT594797.1:5604492-5604510
AATAGTGCTTTCCAAGTTTTTATGTGATTC5604492CTGCAGCTGCTGAAACTGGAGCTCAAGATTCCTGTTCTCTGCATGCAAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40424813-40424831
TAGAAGAGAAGCAGAGAGATGACTGCAGAG40424813CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39721669-39721687
TAGAAGAGAAGCAGAGAGATGACTGCAGAG39721669CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39276073-39276091
TAGAAGAGAAGCAGAGAGATGACTGCAGAG39276073CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39739779-39739797
TAGAAGAGAAGCAGAGAGATGACTGCAGAG39739779CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40572227-40572245
TAGAAGAGAAGCAGAGAGATGACTGCAGAG40572227CTGCAGCTGCTGAAACTGGCATGGTTTTTTGGAGAGAGAGAGAGAGAGA
Vicia faba genome assembly, chromosome: 2.
OX451737.1:912805347-912805365
TCAAGGAATCATTCTCTTCGGCCATTGTCT912805347CTGCAGCTGCTGAAACTGGATGTACCTCCTCAAAATGTTGGAAGGGGGT
Vicia faba genome assembly, chromosome: 3.
OX451738.1:11472054-11472072
TTAAGGAATCATTCTCTTCGGTCATTGTCT11472054CTGCAGCTGCTGAAACTGGATGTACCTCCTCGAAATGCTGGAAGGGGGT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1593099580-1593099598
TCAAGGAATCATTCTCTTCGGCCATTGTCT1593099580CTGCAGCTGCTGAAACTGGATGCACCTCCTCGAAATGCTGGAAGGGGGT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1625620481-1625620499
TCAAGGAAACATTCTCTTCAACTGTTGTCT1625620481CTGCAGCTGCTGAAACTGGACGCACCTCCTCGAAATGCTGAAAGGGGGT
Vicia faba genome assembly, chromosome: 5.
OX451740.1:611195920-611195938
TCAAGGAATCATTCTCTTCGGCCATTGTCT611195920CTGCAGCTGCTGAAACTGGATGTACCTCCTCGAAATGCTGGAAGGGGGT
Vicia faba genome assembly, chromosome: 5.
OX451740.1:1131656974-1131656992
TCAAGGAATCATTCTCTTCGGCTATTGTCT1131656974CTGCAGCTGCTGAAACTGGATGCACCTCCTCGAAATGCTGGAAGGGGGT
Theobroma cacao genome assembly, chromosome: 10.
OY284457.1:6010647-6010665
AATAGTGCTTTCCAAGTTTTTATGTGATTC6010647CTGCAGCTGCTGAAACTGGAGCTCAAGATTCCTGTTCTCTGCATGCAAA
Theobroma cacao genome assembly, chromosome: 10.
OY284467.1:5984929-5984947
AATAGTGCTTTCCAAGTTTTTATGTGATTC5984929CTGCAGCTGCTGAAACTGGAGCTCAAGATTCCTGTTCTCTGCATGCAAA
Agrostemma githago genome assembly, chromosome: 15.
OY288253.1:25763013-25763031
AAAGCATCATCAGAACACAATTTCAACTAG25763013CTGCAGCTGCTGAAACTGGCAAAATTTTGGTGAAAGTTCCAATCTTTGA
Agrostemma githago genome assembly, chromosome: 16.
OY288254.1:2941576-2941594
GAATCCGTTGGAAGAGTTTCTGCTGTTGTC2941576CTGCAGCTGCTGAAACTGGAGGGCTCTATTGGCCAATCAGCTATAGATC
Agrostemma githago genome assembly, chromosome: 18.
OY288256.1:63269435-63269453
AAAGCATCATCAGAACACCATTTCAACTAG63269435CTGCAGCTGCTGAAACTGGCAAATTTTGGTGAAAGTTCCAATCTTTGAT
Ligustrum vulgare genome assembly, chromosome: 16.
OY743183.1:10745049-10745067
CTGGAAAGCTGGATGGGCTGGAACGTGATG10745049CTGCAGCTGCTGAAACTGGCATATATATACGAATTAAACTGGTTGTACC
Ligustrum vulgare genome assembly, chromosome: 17.
OY743184.1:5510182-5510200
GAAGAAAGCTGGATGGGCTGGAACGTGATG5510182CTGCAGCTGCTGAAACTGGGATATATACACAGAGGATAGGCAGCAGAGA
Hymenobacter sp. APR13, complete genome.
CP006587.1:1950784-1950802
GGCGGCGGCCAGCTGAAACGCCACGTCCTG1950784CTGCAGCTGCTGAAACTGGTAGCTGAAATGGCCGGGCCGGTCCTGCACG
Hymenobacter sp. DG25A, complete genome.
CP012623.1:3316385-3316403
CGCGGCGGCCAGCTGAAAATCAACGGAGCG3316385CTGCAGCTGCTGAAACTGGTAGGTAAACCGGTTGCCGGATTCTTTCTGC
Hymenobacter sediminicola strain S2-20-2 chromosome, complete genome.
CP060202.1:59161-59179
GGCCGCGGCCAGCTGGAACTCCACGTCCTT59161CTGCAGCTGCTGAAACTGGTAGCTGAAGTGGCCGGGCCGGTCCTGCACG
Zeuzera pyrina genome assembly, chromosome: 11.
OU015628.1:4741370-4741388
CTCAGTAGTTTGTAGGCTTTGTATCAAAGT4741370CTGCAGCTGCTGAAACTGGGTCTGGATTCGGCGGGAAAATGCAGCCCAA
Trichobilharzia szidati genome assembly, chromosome: 2.
OX235272.1:88776903-88776921
ATTACTGGGTTTTAAAACAGCCTGTGAGAG88776903CTGCAGCTGCTGAAACTGGAAATAGTCTCACATGAACATTTCAGTGGTA
Parasteatoda lunata genome assembly, chromosome: 10.
OX421979.1:68451269-68451287
GCACGATACATTAAAATGTGCAACTACTTA68451269CTGCAGCTGCTGAAACTGGAAAAAACTACACTTACATAAAAACTTGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCAGCTGCTGAAACTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCAGCTGCTGAAACTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.212 | 0.203 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCAGCTGCTGAAACTGG&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGTTTCAGCAGCTGCAG&k=0&no_gap=0&offset=0&limit=0
0.306 | 0.000 | cgi_end;

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