GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2DV03TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939421.1:73-94
ATTCGTTCACCTACTCGTCTCTCTTCTCAT73CTGCATTACCTTCACGTCTTCCCTCTCCGTCGTCCCTGACCCATCAACACAA
RS2GA85TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946400.1:67-88
ATTCGTTCACCTACTCGTCTCTCTTCTCAT67CTGCATTACCTTCACGTCTTCCCTCTCCGTCGTCCTTGACCCATCAACACAA
RR1H496TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD965739.1:72-93
ATTCGTTCACCTACTCGTCTCTCTTCTCAT72CTGCATTACCTTCACGTCTTCCCTCTCCGTCGTCCCTGACCCATCAACACAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_29186.
FX680924.1:92-113
ATTCGTTCACCTACTCGTCTCTCTTCTCAT92CTGCATTACCTTCACGTCTTCCCTCTCCGTCGTCCCTGACCCATCAACACAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:45219464-45219485
TTGTGTTGATGGGTCAGGGACGACGGAGAG45219464GGAAGACGTGAAGGTAATGCAGATGAGAAGAGAGACGAGTAGGTGAACGAAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:45219464-45219485
TTGTGTTGATGGGTCAGGGACGACGGAGAG45219464GGAAGACGTGAAGGTAATGCAGATGAGAAGAGAGACGAGTAGGTGAACGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCATTACCTTCACGTCTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCATTACCTTCACGTCTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.308 | 0.299 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCATTACCTTCACGTCTTCC&k=0&no_gap=0&offset=0&limit=50
0.333 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGACGTGAAGGTAATGCAG&k=0&no_gap=0&offset=0&limit=46
0.334 | 0.001 | cgi_end;

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