GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 11:48:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7097652-7097671
GGACCAATAGATATGATCACATCAACCAAT7097652CTGCGCTTCCTCAATCTGTCCTCAAATGGGCTTACTGGTGAGTTACCGTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6783686-6783705
GGACCAATAGATATGATCACATCGACCAAT6783686CTGCGCTTCCTCAATCTGTCCTCAAATGGGCTTACTGGTGAGTTACCGTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7261540-7261559
GGACCAATAGATATGATCACATCGACCAAT7261540CTGCGCTTCCTCAATCTGTCCTCAAATGGGCTTACTGGTGAGTTACCGTT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7090735-7090754
GGACCAATAGATATGATCACATCGACCAAT7090735CTGCGCTTCCTCAATCTGTCCTCAAATGGGCTTACTGGTGAGTTACCGTT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5763136-5763155
GGACCAATAGATATGATCACATCGACCAAT5763136CTGCGCTTCCTCAATCTGTCCTCAAATGGGATTACTGGTGAGTTACCATT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36187430-36187449
AACGGTAACTCACCAGTAAGCCCATTTGAG36187430GACAGATTGAGGAAGCGCAGATTGGTCGATGTGATCATATCTATTCGTCC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39078158-39078177
AATGGTAACTCACCAGTAAGCCCATTTGAG39078158GACAGATTGAGGAAGCGCAGATTGGTCGATGTGATCATATCTATTGGTCC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39091702-39091721
AATGGTAACTCACCAGTAAGCCCATTTGAG39091702GACAGATTGAGGAAGCGCAGATTGGTCGATGTGATCATATCTATTGGTCC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39900835-39900854
AATGGTAACTCACCAGTAAGCCCATTTGAG39900835GACAGATTGAGGAAGCGCAGATTGGTCGATGTGATCATATCTATTGGTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCGCTTCCTCAATCTGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCGCTTCCTCAATCTGTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCGCTTCCTCAATCTGTC&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GACAGATTGAGGAAGCGCAG&k=0&no_gap=0&offset=0&limit=45
0.146 | 0.003 | cgi_end;

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