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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 19:54:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

001001AALA009505HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA009505, mRNA sequence.
CN865104.1:482-502
TAGGGTACAAGTTGGTTCCCGGTGGCACTG482CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
010626AAYA005560HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus domestica cDNA clone AAYA005560, mRNA sequence.
CN895596.1:612-632
TAGGGTATAAGTTGGTTCCCGGTGGCACTG612CTGCTAGCTTGCTTGATCTTG
030123ABLC004822HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC004822, mRNA sequence.
CN909809.1:544-564
TAGGGTACAATTTGGTTCCCGGTGGCACTG544CTGCTAGCTTGCTTGATCTTGACGACCCCTCCCAAAAGAGAGGTGCTTTTA
Mdfrt3039o09.y1 Mdfrt Malus domestica cDNA clone Mdfrt3039o09 5' similar to TR:Q9SW88 Q9SW88 AMINE OXIDASE, mRNA sequence.
CO541218.1:151-171
TAGGGTACAAGTTGGTTCCCGGTGGCACTG151CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Mdfb8009K24.g1 Apple_EST_Mdfb Malus domestica cDNA similar to gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata], mRNA sequence.
DR999351.1:121-141
TAGGGTACAAGTTGGTTCCCGGTGGCACTG121CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
STRAJ92JX cold-stressed Fragaria vesca seedlings cDNA library Fragaria vesca cDNA clone STRAJ92, mRNA sequence.
DY673841.1:802-822
TCGGGTATAAAGTAGTTCCCGGTGGCACTG802CTGCTAGCTTGCTTGATCTTGATGATCCTCCCCAAAAGAGGGGTGCTTTCA
ff_02G02_AC2 Md_fruit-fruit_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254867.1:25-45
ACAAGTTGGTTCCCGGTGGCACTG25CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Mdfwg2105D02.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata], mRNA sequence.
GO504802.1:427-447
TAGGGTACAAGTTGGTTCCCGGTGGCACTG427CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Mdfrfu3513N04.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata], mRNA sequence.
GO535771.1:290-310
TAGGGTACAAGTTGGTTCCCGGTGGCACTG290CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Mdfrjg3506F09.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata], mRNA sequence.
GO541698.1:100-120
TAGGGTACAAGTTGGTTCCCGGTGGCACTG100CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Pyrus pyrifolia mRNA, clone: NFR4_14_54, 5' end sequence, expressed in fruit.
HX754837.1:29-49
GGGTACAAGTTGGTTCCCGGTGGCACTG29CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Pyrus pyrifolia mRNA, clone: NFR6_14_85, 5' end sequence, expressed in fruit.
HX760006.1:416-436
TAGGGTACAAGTTGGTTCCCGGTGGCACTG416CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Pyrus pyrifolia mRNA, clone: NFR6_20_35, 5' end sequence, expressed in fruit.
HX760392.1:573-593
TAGGGTACAAGTTGGTTCCTGGTGGCACTG573CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
VCDC15216 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_002_N23 5', mRNA sequence.
JG768254.1:82-102
CAGGGTACAAAATTGTTCCTGGTGGCATTG82CTGCTAGCTTGCTTGATCTTGATGATCCTCCACAACTGAGGGCCGCTTTTA
VCDC15243 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_002_P03 5', mRNA sequence.
JG768281.1:82-102
CAGGGTACAAAATTGTTCCTGGTGGCATTG82CTGCTAGCTTGCTTGATCTTGATGATCCTCCACAACTGAGGGCCGCTTTTA
VCDC15337 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_003_D17 5', mRNA sequence.
JG768375.1:82-102
CAGGGTACAAAATTGTTCCTGGTGGCATTG82CTGCTAGCTTGCTTGATCTTGATGATCCTCCACAACTGAGGGCCGCTTTTA
TSA: Pyrus pyrifolia mRNA, contig: contig_7084.
FX397637.1:648-668
TAGGGTACAAGTTGGTTCCCGGTGGCACTG648CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
TSA: Pyrus communis mRNA, contig: lc6509.
FX615094.1:33-53
TCGGGTACAAGTTGGTTCCCGGTGGCACTG33CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Antiaris toxicaria isolate JCLG002 chromosome 11.
CP141163.1:19709857-19709877
TCGGGTACAAGGTGGTCCCGAGTGGTACTG19709857CTGCTAGCTTGCTTGATCTTGATGACCCTCCACAAAGGAGAGGTGCCTTCA
Antiaris toxicaria isolate JCLG002 chromosome 11.
CP141176.1:19631824-19631844
TCGGGTATAAGGTGGTCCCGAGTGGTACTG19631824CTGCTAGCTTGCTTGATCTTGATGACCCTCCACAAAGGAGAGGTGCCTTCA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:22977848-22977868
TAGGGTACAAGTTGGTTCCCGGTGGCACTG22977848CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAAAGGTGCTTTTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:28574245-28574265
TAGGGTACAAGTTGGTTCCCGGTGGCACTG28574245CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:28988746-28988766
TAGGGTACAAGTTGGTTCCCGGTGGCACTG28988746CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:31697155-31697175
TAGGGTACAAGTTGGTTCCCGGTGGCACTG31697155CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:29925539-29925559
TAGGGTACAAGTTGGTTCCCGGTGGCACTG29925539CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus domestica amine oxidase 2 mRNA, complete cds.
KM067896.1:1814-1834
TAGGGTACAAGTTGGTTCCCGGTGGCACTG1814CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:31124443-31124463
TAGGGTACAAGTTGGTTCCCGGTGGCACTG31124443CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:30863895-30863915
TAGGGTACAAGTTGGTTCCCGGTGGCACTG30863895CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:31078448-31078468
TAGGGTACAAGTTGGTTCCCGGTGGCACTG31078448CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:30622925-30622945
TAGGGTACAAGTTGGTTCCCGGTGGCACTG30622925CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:31523579-31523599
TAGGGTACAAGTTGGTTCCCGGTGGCACTG31523579CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Potentilla anserina genome assembly, chromosome: 5.
OW176985.1:9398557-9398577
TCGGTTATAAAGTAGTTCCCGGTGGCACTG9398557CTGCTAGCTTGCTTGATCTTGATGATCCTCCTCAAAAGAGGGGTGCTTTCA
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:8115909-8115929
TAGGGTACAAGTTGGTTCCCGGTGGCACTG8115909CTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAGAGGTGCTTTTA
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:23823920-23823940
TAGGGTACAAGTTGGTGCCCGTTGGCACTG23823920CTGCTAGCTTGCTTGATCTTGACGACCCTCCCAAAAGAGAGGTGCTTTTAC
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:10924687-10924707
TAGGGTACAAGTTGGTTCCCGGTGGCACTG10924687CTGCTAGCTTGCTTGATCTTGACGATCCTCCCCAAAGGAGAGGTGCTTTTA
TSA: Allium fistulosum mRNA, contig: AFU_00840.
FX554565.1:395-415
TGAAAGCAGCTCTAACTTGTGGTGGATCAT395CAAGATCAAGCAAGCTAGCAGCTGTAGCTGAAGGAACTATTCTATATCCCG
TSA: Pyrus x bretschneideri Unigene41194_XinShao mRNA sequence.
JR632832.1:329-349
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT329CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Daucus carota subsp. sativus cultivar DH1 chromosome 1.
CP093343.1:5971796-5971816
TAAAAGCGGCCCTCAGTTGTGGAGGATCAT5971796CAAGATCAAGCAAGCTAGCAGCAATGCCACCAGGAACAATTTTGTACCCTG
Daucus carota isolate Kuroda chromosome 1.
CP125301.1:5949751-5949771
TAAAAGCAGCCCTCAATTGTGGAGGATCAT5949751CAAGATCAAGCAAGCTAGCAGCAATGCCACCAGGAACAATTTTGTACCCCG
Fragaria x ananassa cultivar Benihoppe chromosome 19.
CP139757.1:3191-3211
TGAAAGCACCCCTCTTTTGGGGAGGATCAT3191CAAGATCAAGCAAGCTAGCAGCAGTGCCACTGGGAACTACCTTATACCCGA
Fragaria x ananassa cultivar Benihoppe chromosome 19.
CP139757.1:388056-388076
TGAAAGCACCCCTCTTTTGGGGAGGATCAT388056CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACTACCTTATACCCGA
Fragaria x ananassa cultivar Benihoppe chromosome 18.
CP139758.1:461487-461507
TGAAAGCACCCCTCTTTTGGGGAGGATCAT461487CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACTACCTTATACCCGA
Fragaria x ananassa cultivar Benihoppe chromosome 17.
CP139759.1:462536-462556
TGAAAGCACCCCTCTTTTGGGGAGGATCAT462536CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACTACCTTATACCCGA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:6678598-6678618
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT6678598CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:21764005-21764025
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT21764005CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:7130745-7130765
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT7130745CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:21581003-21581023
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT21581003CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:20944445-20944465
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT20944445CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:12296080-12296100
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT12296080CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:10980559-10980579
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT10980559CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Allium cepa genome assembly, chromosome: 7.
LR994635.1:213228107-213228127
TGAAAGCAGCTCTAACTTGTGGTGGATCAT213228107CAAGATCAAGCAAGCTAGCAGCTGTGGCTGAAGGAACTATTCTATATCCTG
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:12523946-12523966
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT12523946CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus domestica genome assembly, chromosome: 6.
OU696682.1:12561662-12561682
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT12561662CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus domestica genome assembly, chromosome: 6.
OU744547.1:12383993-12384013
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT12383993CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Malus domestica genome assembly, chromosome: 6.
OU744958.1:12280461-12280481
TAAAAGCACCTTTCTTTTGGGGAGGGTCGT12280461CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Hedera helix genome assembly, chromosome: 1.
OX359264.1:5778454-5778474
TGAAAGCGCCCCGTAATTGTGGAGGATCAT5778454CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACAACTTTGTACCCTG
Rosa rugosa genome assembly, chromosome: 4.
OY288194.1:42090322-42090342
TGAAAGCACCCCTCTTTTGAGGAGGATCAT42090322CAAGATCAAGCAAGCTAGCAGCAGTCCCACCGGGAACCACCTTATACCCAA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:6855517-6855537
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT6855517CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:11472873-11472893
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT11472873CAAGATCAAGCAAGCTAGCAGCAGTGCCATCGGGAACTAACTTGTACCCTA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:26664678-26664698
TAAAAGCACCTCTCTTTTGGGGAGGGTCGT26664678CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACCAACTTGTACCCTA
Potentilla sterilis genome assembly, chromosome: 12.
OY821765.1:31890716-31890736
TGAAAGCGCCCCTCTTTTGGGGAGGATCAT31890716CAAGATCAAGCAAGCTAGCAGCAGTGCCACCGGGAACTACCTTATACCCGA
Dryas octopetala genome assembly, chromosome: 9.
OY992840.1:9935589-9935609
TAAAAGCACCCCTCTTTTGAGGAGGGTCAT9935589CAAGATCAAGCAAGCTAGCAGCAGTGCCACCAGGAACCACCTTGTACCCGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGCTAGCTTGCTTGATCTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCTAGCTTGCTTGATCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.313 | 1.304 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTAGCTTGCTTGATCTTG&k=0&no_gap=0&offset=0&limit=50
1.479 | 0.166 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGATCAAGCAAGCTAGCAG&k=0&no_gap=0&offset=0&limit=15
1.496 | 0.017 | cgi_end;

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