GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:22:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome X.
CP130739.1:151812139-151812161
TTCTTCCTTGTTTTTTATCTTTTTAACTTC151812139CTGCTCATTTCTGGTTTGATTGGTGACAATGACGATCTCCTACGACAATTCAT
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome Y.
CP130887.1:156962699-156962721
TTCTTCCTTGTTTTTTATCTTTTTAACTTC156962699CTGCTCATTTCTGGTTTGATTGGTGACAATGACGATCTCCTACGACAATTCAT
S. oleracera NIR gene for nitrite reductase (EC=1.7.7.1).
X17031.1:423-445
TTCTTCCTTGTTTTTTATCTTTTTAACTTC423CTGCTCATTTCTGGTTTGATTGGTGACAATGACGATCTCCTACGACAATTCAT
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome X.
CP130739.1:134789607-134789629
ATGAATCGTCGTAGGAGATCGTCATTGTCA134789607CCAATCAAACCAGAAATGAGCAGGAATTAAAAGAAAAAAATAAAAAAACAAGG
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome Y.
CP130887.1:141258255-141258277
ATGAATCGTCGTAGGAGATCGTCATTGTCA141258255CCAATCAAACCAGAAATGAGCAGGAATTAAAAGAAAAAAAGAAAAAAACAAGG
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:1461177814-1461177836
GAGAGCATATGCTTCCAAAAATGTAGGTGC1461177814CCAATCAAACCAGAAATGAGCAGCTATGTCTTGTAGTTGCATTGGTGAATATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCTCATTTCTGGTTTGATTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCTCATTTCTGGTTTGATTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTCATTTCTGGTTTGATTGG&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CCAATCAAACCAGAAATGAGCAG&k=0&no_gap=0&offset=0&limit=47
0.117 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).