GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 15:42:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

29-L105548-1033-024-J08-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-024-J08 5', genomic survey sequence.
JY317771.1:624-645
ATAACGTAAATAGAAAATACTTGGATAAAT624CTGCTCGATTTGGAGGTCTCTGAAGTTGTATAAATGTATTCCATTGCTACGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:42130205-42130226
ATAACGTAAATAGAAAATACTTGGATAAAT42130205CTGCTCGATTTGGAGGTCTCTGAAGTTGTATAAATGTATTCCATTGCTACGG
Beta vulgaris subsp. vulgaris cultivar US H20 flowering locus T (FT) gene, complete cds.
HQ454502.1:504-525
CCGTAGCAATGGAATACATTTATACAACTT504CAGAGACCTCCAAATCGAGCAGATTTATCCAAGTATTTTCTATTTACGTTAT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:48972182-48972203
TAGCAGCAGAGCCATACATTTATCCAACCT48972182CAGAGACCTCCAAATCGAGCAGATTTCTCCCAATTTCAGTTACTTACGTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCTCGATTTGGAGGTCTCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCTCGATTTGGAGGTCTCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.152 | 0.143 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTCGATTTGGAGGTCTCTG&k=0&no_gap=0&offset=0&limit=50
0.172 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=CAGAGACCTCCAAATCGAGCAG&k=0&no_gap=0&offset=0&limit=48
0.173 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).