GGGenome | Results

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2025-04-06 06:31:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Canis lupus genome assembly, chromosome: 14.
HG994400.1:117127-117146

AGTCATTTCTTGTCCTTTGGTTGGCTGGAA117127CTGCTGCTCCAACTTTCAGACACAGGCTCCCGTGGACATGTAGTAAATCC

Canis Familiaris chromosome 14, clone XX-66K24, complete sequence.
AC187317.7:143473-143492

GGATTTACTACATGTCCACGGGAGCCTGTG143473TCTGAAAGTTGGAGCAGCAGTTCCAGCCAACCAAAGGACAAGAAATGACT

Canis lupus familiaris breed Labrador retriever chromosome 14a.
CP050589.1:62437402-62437421

GGATTTACTACATGTCCACGGGAGCCTGTG62437402TCTGAAAGTTGGAGCAGCAGTTCCAGCCAACCAAAGGACAAGAAATGACT

Canis lupus familiaris breed Labrador retriever chromosome 14b.
CP050623.1:62438835-62438854

GGATTTACTACATGCCCACGGGAGCCTGTG62438835TCTGAAAGTTGGAGCAGCAGTTCCAGCCAACCAAAGGACAAGAAATGACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTGCTCCAACTTTCAGA&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGAAAGTTGGAGCAGCAG&k=0&no_gap=0&offset=0&limit=49
0.133 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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