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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:57:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gallus gallus breed Huxu chromosome 4.
CP100558.1:48760871-48760890
AATGCTGAAATTACTTGAAACTCTTGTTTT48760871CTGCTTTGGTTTGGAAGAAAAGGCTGTGGGATATGTTGTGCTAGCATTGC
Podarcis cretensis genome assembly, chromosome: 2.
OX638150.1:42796549-42796568
TTTCTGCTCTGCATGAAGGGTGATTTTTCT42796549CTGCTTTGGTTTGGAAGAAACATAACCCTGTCTCTTCTGCCCCCTCCACC
Sequence 535 from patent US 9456561.
KH269127.1:1-20
1CTGCTTTGGTTTGGAAGAAA
TSA: Betula platyphylla Unigene68183_All.Beplwood mRNA sequence.
KA227195.1:1637-1656
GGCAGTTGCGGCAGGTGACATAGCTCTCAG1637CTGCTTTGGTTTGGAAGAAAACGCGCAGAAACAACAACAAAAGAAGAAGA
Trifolium pratense DNA, clone:RCG02863.
DE214397.1:1-20
1CTGCTTTGGTTTGGAAGAAATTGTTTCGATTTGGAGGAAGAAGAAGAACA
Carpinus viminea chromosome 7.
CP054673.1:50440-50459
GGCAGTTGCGGCAGGTGACATTGCTCTCAG50440CTGCTTTGGTTTGGAAGAAAACAAGCACAAACAACAACAAAAGAAGAAGA
Alnus glutinosa genome assembly, chromosome: 1.
OY340898.1:53305525-53305544
GGCAGTTGCGGCAGGTGACATTGGTCTCAG53305525CTGCTTTGGTTTGGAAGAAATCACGCACAAACAACAACAAAAGAAGAAGA
Alisma plantago-aquatica genome assembly, chromosome: 6.
OY856414.1:794249631-794249650
AGTCTCTTCCTTTCTTCTGAGATCTGTCCA794249631CTGCTTTGGTTTGGAAGAAAACTTCAGTAGTTTGAAGCTTTGATTCAGAG
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:88641369-88641388
TTTCTTCTCAACTTCAGATAGATCTATCCA88641369CTGCTTTGGTTTGGAAGAAAAGTTCAAGAGTTCAAATCTTTGATGAGAAG
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:1305993605-1305993624
CTTTCGTCCACATTGCAGCTCCAGCCAACT1305993605CTGCTTTGGTTTGGAAGAAAATAAAAGTAAGAACGAGGAAAAATAAGAAT
Perizoma flavofasciatum genome assembly, chromosome: 14.
OY292433.1:4279782-4279801
AGACTATTTCATATGATTGCCAGTTTTGCA4279782CTGCTTTGGTTTGGAAGAAAAATGTTGTCACAGTAAAGATGTTAAATGTA
Canis lupus familiaris breed Labrador retriever chromosome 29a.
CP050580.1:1370661-1370680
TGGCTTTCTGAAAGTTCTTTGATTATTGAC1370661TTTCTTCCAAACCAAAGCAGCATTGACAAAGCTCTGAATCTCCCCACGCA
Canis lupus familiaris breed Labrador retriever chromosome 29b.
CP050629.1:1372524-1372543
TGGCTTTCTGAAAGTTCTTTGATTATTGAC1372524TTTCTTCCAAACCAAAGCAGCATTGACAAAGCTCTGAATCTCCCCACGCA
Canis lupus genome assembly, chromosome: 29.
HG994412.1:3617479-3617498
TGGCTTTCTGAAAGTTCTTTGATTATTGAC3617479TTTCTTCCAAACCAAAGCAGCATTGACAAAGCTCTGAATCTCCCCACGCA
Furcifer pardalis isolate Fpa_1 chromosome 3.
CP126892.1:109549637-109549656
ACTTGTATGGGATCTAAGGGATTTTTTTCT109549637TTTCTTCCAAACCAAAGCAGCAAACGAAAGTTGAAAAACAGAACAGAAAT
Paralichthys olivaceus cDNA, clone: JFConA459F.
AU090942.1:373-392
GTGCAGAGAGTTATGCCATGCAGTCGTCGT373TTTCTTCCAAACCAAAGCAGATGTATTTTATCTTCAAGCCTCAGAAGTTT
G1143P322RB2.T0 Anolis carolinensis pooled normalized Dewlap cDNA Library Anolis carolinensis cDNA, mRNA sequence.
FG679608.1:560-579
AAAGGGGCATTTTCTTGCTGATGCCAGATG560TTTCTTCCAAACCAAAGCAGAAGGTCTCCAGTGCATGTTTGGGTTCTAAG
Alnus glutinosa EST AG-J07f_002_I21.
FQ356599.1:1-20
1TTTCTTCCAAACCAAAGCAGCTGAGACCAATGTCACCTGCCGCAACTGCC
TSA: Betula platyphylla Unigene79722_All.Beplwood mRNA sequence.
KA238734.1:109-128
TCTTCTTCTTTTGTTGTTGTTTCTGCGCGT109TTTCTTCCAAACCAAAGCAGCTGAGAGCTATGTCACCTGCCGCAACTGCC
TSA: Betula platyphylla Unigene10561_All.Beplwood mRNA sequence.
KA250482.1:109-128
TCTTCTTCTTTTGTTGTTGTTTCTGCGCGT109TTTCTTCCAAACCAAAGCAGCTGAGAGCTATGTCACCTGCCGCAACTGCC
TSA: Corylus avellana CAV_016427.ca, mRNA sequence.
KA409648.1:84-103
TCTTCTTCTTCTTTTGTTGTTTGTGCGTGT84TTTCTTCCAAACCAAAGCAGCTGAGAGCAATGTCACCTGCAGCAACTGCC
Trifolium pratense DNA, clone:RCG01427.
DE213248.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG01654.
DE213430.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG02650.
DE214227.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG03023.
DE214523.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG03850.
DE215204.1:408-427
TGTTCTTCTTCTTCCTCCAAATCAAAACAA408TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG03912.
DE215256.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Trifolium pratense DNA, clone:RCG01096.
DE246735.1:164-183
TGTTCTTCTTCTTCCTCCAAATCAAAACAA164TTTCTTCCAAACCAAAGCAG
Corylus americana cultivar Rush chromosome 1.
CP125814.1:47183-47202
TCTTCTTCTTCTTTTGTTGTTTGTGCGTGT47183TTTCTTCCAAACCAAAGCAGCTGAGAGCAATGTCACCTGCAGCAACTGCC
Corylus americana cultivar Winkler chromosome 1.
CP125825.1:40769-40788
TCTTCTTCTTCTTTTGTTGTTTGTGCGTGT40769TTTCTTCCAAACCAAAGCAGCTGAGAGCAATGTCACCTGCAGCAACTGCC
Corylus avellana genome assembly, chromosome: ca1.
LR899423.1:40469-40488
TCTTCTTCTTCTTTTGTTGTTTGTGCGTGT40469TTTCTTCCAAACCAAAGCAGCTGAGAGCAATGTCACCTGCAGCAACTGCC
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:45671046-45671065
AATTAACATGGACATTTTTCCAAAAGTATG45671046TTTCTTCCAAACCAAAGCAGCCTTACTAAAAAACTGGACCTTGCGTGAGA
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:637468635-637468654
TCATAAGAATTTTCTTTGAAGGGCCACAAT637468635TTTCTTCCAAACCAAAGCAGGAATTTTGATAAAGGATAAGTAAAAGATAG
Cheilosia impressa genome assembly, chromosome: 2.
OX411881.1:5720916-5720935
TACCGGACCAAATATACGTCGAAAATATAT5720916TTTCTTCCAAACCAAAGCAGATCAGAATCAGCTCTTCCCTGAAGATTATA
Perizoma affinitatum genome assembly, chromosome: 19.
OY560203.1:8467014-8467033
TACATTTAACATCTTTACTGCCACAACATG8467014TTTCTTCCAAACCAAAGCAGTGCAAAACTGGCAATCATACGAATTAGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCTTTGGTTTGGAAGAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCTTTGGTTTGGAAGAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTTTGGTTTGGAAGAAA&k=0&no_gap=0&offset=0&limit=50
0.601 | 0.412 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCTTCCAAACCAAAGCAG&k=0&no_gap=0&offset=0&limit=39
0.617 | 0.016 | cgi_end;

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