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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:32:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

K6 Whero seedling lambda ZapII cDNA library Pisum sativum cDNA clone K6, mRNA sequence.
AA430942.1:560-580
CACCATATACAAGGGGTCAAATATTTTCAA560CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
Vicia faba mRNA, clone: VfPES06N06, unspecified EST.
HX909646.1:718-738
CACCATATACAAGGGGTCAAATATTTTCAA718CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTGTCTAACTCTGGATT
TSA: Lens culinaris contig03482.Lecu mRNA sequence.
JI849753.1:389-409
CACCATATACAAGGGGTCAAATATTTTCAA389CTGGAATTCTTGCGGTTTAACTCTTGATTAGTATCAAAATCTGGATTAAGA
TSA: Pisum sativum Ps_contig_mira-ass_982 mRNA sequence.
JI897831.1:790-810
CACCATATACAAGGGGTCAAATATTTTCAA790CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
TSA: Pisum sativum Ps_contig_mira-ass_16640 mRNA sequence.
JI913088.1:153-173
CACCATATACAAGGGGTCAAATATTTTCAA153CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
TSA: Pisum sativum Ps_contig_mira-ass_38296 mRNA sequence.
JI933946.1:143-163
CACCATATACAAGGGGTCAAATATTTTCAA143CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
TSA: Pisum sativum Ps_contig_mira-ass_62638 mRNA sequence.
JI953013.1:276-296
ACCATATACRAAGGGGTCAAATATTTTCAA276CTGGAATTCTTGCGGTTTAACTATTGATTTAATTAGTATCTAAATCTGGTA
TSA: Pisum sativum contig01804.PisaPYK9 mRNA sequence.
JR952516.1:728-748
CACCATATACAAGGGGTCAAATATTTTCAA728CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1413433480-1413433500
CACCATATACAAGGGGTCAAATATTTTCAA1413433480CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTGTCTAACTCTGGATT
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:642361479-642361499
CACCATACACAAGGGGTCAAATATTTTCAA642361479CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
Lathyrus aphaca genome assembly, chromosome: 4.
OZ014522.1:549303845-549303865
CACCATATACAAGGGGTCAAATATTTTCAA549303845CTGGAATTCTTGCGGTTTAACTATTGATTAATTAGTATCTAAATCTGGATT
Vicia faba mRNA, clone: VfEES06D09, unspecified EST.
HX901761.1:243-263
AATCCAGAGTTAGACACTAATTAATCAATA243GTTAAACCGCAAGAATTCCAGTTGAAAATATTTGACCCCTTGTATATGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGGAATTCTTGCGGTTTAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGGAATTCTTGCGGTTTAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.252 | 0.244 | search_plus_done; http://172.18.8.135:50400/match?q=CTGGAATTCTTGCGGTTTAAC&k=0&no_gap=0&offset=0&limit=50
0.476 | 0.224 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAAACCGCAAGAATTCCAG&k=0&no_gap=0&offset=0&limit=39
0.477 | 0.001 | cgi_end;

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