GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:18:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

PP_LEa0014E03f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014E03f, mRNA sequence.
BU042879.1:506-525
CATCATCACTCTCTACGATGTTTCAAACAT506CTGGCACATTCCATTACTTTTAAGAGAATCAGAAGCTCATGAAGCAATCT
PP_LEa0019M11f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0019M11f, mRNA sequence.
BU044553.1:165-184
CATCATCACTCTCTACGATGTTTCAAACAT165CTGGCACATTCCATTACTTTTAAGAGATCAGAAGGCTCATGAAGCAATCT
PP_LEa0021P08f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0021P08f, mRNA sequence.
BU045242.1:23-42
ACTCTCTACGATGTTTCAAACT23CTGGCACATTCCATTACTTTTAAGAGATCAGAAGGCTCATGAAGCAATCT
000514AENA002173HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA002173, mRNA sequence.
CN925425.1:62-81
CATCATCACTCTCTACGACGTTCCCAACAT62CTGGCACATTCCATTACTTTTAA
PU1_plate49_M06 PU1 Prunus persica cDNA clone PU1_plate49_M06 5' similar to PU1_plate49_M06 similar to CTP synthase, putative / UTP--ammonia ligase, putative Arabidopsis thaliana, mRNA sequence.
DW353276.1:234-253
CATCATCACTCTCTACGATGTTTCAAACAT234CTGGCACATTCCATTACTTTTAAGAGATCAGAAGGCTCATGAAGCAATCT
PU2_plate23_D10 PU2 Prunus persica cDNA clone PU2_plate23_D10 5' similar to PU2_plate23_D10 similar to CTP synthase (UTP--ammonia ligase), putative Arabidopsis thaliana, mRNA sequence.
DW356251.1:212-231
CATCATCACTCTCTACGATGTTTCAAACAT212CTGGCACATTCCATTACTTTTAAGAGATCAGAAGGCTCATGAAGCAATCT
PU4_plate21_K08 PU4 Prunus persica cDNA similar to similar to CTP synthase (UTP--ammonia ligase), putative [Arabidopsis thaliana], mRNA sequence.
DY647905.1:269-288
CATCATCACTCTCTACGATGTTTCAAACAT269CTGGCACATTCCATTACTTTTAAGAGATCAGAAGGCTCATGAAGCAATCT
000817AALB002475HT (AALB) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALB002475, mRNA sequence.
EB118177.1:316-335
CGTCATCACTCTCTACGACGTTCCCAACAT316CTGGCACATTCCATTACTTTTAAGAGATCAGAAAGCTCATGAAGCAA
030207ABPB006409HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB006409, mRNA sequence.
EB152764.1:90-109
CGTCATCACTCTCTACGACGTTCCCAACAT90CTGGCACATTCCATTACTTTTAAGAGATCAGAAAGCTCATGAAGCAATCT
Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:6837486-6837505
CATCATCACTCTCTACGATGTTTCCAACAT6837486CTGGCACATTCCATTACTTTTAAGAGTGAGTAGTTCTCTACAACTTCTGA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:10553655-10553674
CATCATCACTCTCTACGACGTTCCCAACAT10553655CTGGCACATTCCATTACTTTTAAGAGTAAGTTGTTCTCCACAAATTCCGA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:10368554-10368573
CATCATCACTCTCTACGACGTTCCCAACAT10368554CTGGCACATTCCATTACTTTTAAGAGTAAGTTGTTCTCCACAAATTCTGA
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:11301491-11301510
CATCATCACTCTCTACGACGTTCCCAACAT11301491CTGGCACATTCCATTACTTTTAAGAGTAAGTTGTTCTCCACAAATTCTGA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8252498-8252517
CATCATCACTCTCTACGACGTTCCCAACAT8252498CTGGCACATTCCATTACTTTTAAGAGTAAGTTGTTCTCCACAAATTCTGA
Dryas octopetala genome assembly, chromosome: 1.
OY992832.1:9446659-9446678
TATAATAACTCTCTATGACGTTCCCAACAT9446659CTGGCACATTCCATTACTTTTAAGAGTAAGTAGCTCTCCACAACTTCTGA
Mytilus edulis genome assembly, chromosome: 13.
OY782968.1:18497378-18497397
CAAACATAGAAACGAAATATTCTATAGCAA18497378CTGGCACATTCCATTACTTTAAGAAAAATGGTAGGTTTAACCGGGTCTTA
Acomys russatus genome assembly, chromosome: 7.
LR877218.1:36108190-36108209
GATTGTTAAGGATTCCTACTGCATACCAAG36108190AAAGTAATGGAATGTGCCAGAGAGTAAATAGTGCACAGCCACACTGTAGG
Acomys kempi genome assembly, chromosome: 11.
OU015365.1:92077149-92077168
GATTGTTAAGGATTCCTACTGCGTACCAAG92077149AAAGTAATGGAATGTGCCAGAGAGTAAATAGTGTAAGTTTTATTATCTGC
Acomys dimidiatus genome assembly, chromosome: 11.
OU015384.1:81802831-81802850
GATTGTTAAGGATTCCTACTGCGTACCAAG81802831AAAGTAATGGAATGTGCCAGAGAGTAAATAGTGTTAAGTTTTATTATCTG
Acomys percivali genome assembly, chromosome: 11.
OU015752.1:100397662-100397681
GATTGTTAAGGATTCCTATTGCATACCAAG100397662AAAGTAATGGAATGTGCCAGAGAGTAAATAGTGTAAGTTTTATTATTTCC
Scyliorhinus canicula genome assembly, chromosome: 1.
LR744030.1:59450455-59450474
TTCTGCACTGTAAGTTCTATGATCATCAGC59450455AAAGTAATGGAATGTGCCAGAAACAATGCTATCAAGCAAGGCTTATGCAG
Meleagris gallopavo genome assembly, chromosome: 8.
OW982260.1:26335738-26335757
TGAGTGAAAGTGTTGGTATTTTTGAACTTA26335738AAAGTAATGGAATGTGCCAGACATCATCAATTCTGTTTGGTTTTAGAGGT
Meleagris gallopavo genome assembly, chromosome: 8.
OW982299.1:15109731-15109750
TGAGTGAAAGTGTTGGTATTTTTGAACTTA15109731AAAGTAATGGAATGTGCCAGACATCATCAATTCTGTTTGGTTTTAGAGGT
TSA: Pyrus x bretschneideri Unigene70185_XinShao mRNA sequence.
JR656587.1:669-688
AGATTGCTTCATGAGCTTTCTGATCTCTTA669AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACA
TSA: Pyrus x bretschneideri Unigene70186_XinShao mRNA sequence.
JR656588.1:669-688
AGATTGCTTCATGAGCTTTCTGATCTCTTA669AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:33309246-33309265
TCAGAATTTGTTGATAACAACTTACTCTTA33309246AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:34681008-34681027
TCAGAATTTGTTGATAACAACTTACTCTTA34681008AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:32053080-32053099
TCAGAATTTGTTGATAACAACTTACTCTTA32053080AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:32605960-32605979
TCAGAATTTGTTGATAACAACTTACTCTTA32605960AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:36270617-36270636
TCAGAATTTGTGGAGAACAACTTACTCTTA36270617AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:34892471-34892490
TCAGAATTTGTTGATAACAACTTACTCTTA34892471AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:33570496-33570515
TCAGAATTTGTGGAGAACAACTTACTCTTA33570496AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCATAGAGAGTGATGATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:31231538-31231557
TCAGAATTTGTTGATAACAACTTACTCTTA31231538AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Prunus mongolica microsatellite TR50321 sequence.
MG682141.1:1785-1804
AGATTGCTTCATGAGCCTTCTGATCTCTTA1785AAAGTAATGGAATGTGCCAGATGTTGGAAACATCGTAGAGAGTGATGATG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:36393546-36393565
TCAGAATTTGTGGAGAACAACTTACTCTTA36393546AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:33835650-33835669
TCAGAATTTGTTGAGAACAACTTACTCTTA33835650AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:35716376-35716395
TCGGAATTTGTGGAGAACAACTTACTCTTA35716376AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35587891-35587910
TCAGAATTTGTGGAGAACAACTTACTCTTA35587891AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:33923144-33923163
TCAGAATTTGTTGATAACAACTTACTCTTA33923144AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:35727151-35727170
TCGGAATTTGTGGAGAACAACTTACTCTTA35727151AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:34960351-34960370
TCAGAATTTGTTGATAACAACTTACTCTTA34960351AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:36863642-36863661
TCAGAATTTGTGGAGAACAACTTACTCTTA36863642AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:33747192-33747211
TCAGAATTTGTTGATAACAACTTACTCTTA33747192AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:32413234-32413253
TCAGAATTTGTTGATAACAACTTACTCTTA32413234AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGACG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:32439480-32439499
TCAGAATTTGTTGATAACAACTTACTCTTA32439480AAAGTAATGGAATGTGCCAGATGTTGGGAACGTCGTAGAGAGTGATGATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGGCACATTCCATTACTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGGCACATTCCATTACTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.564 | 0.556 | search_plus_done; http://172.18.8.135:50400/match?q=CTGGCACATTCCATTACTTT&k=0&no_gap=0&offset=0&limit=50
0.720 | 0.156 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGTAATGGAATGTGCCAG&k=0&no_gap=0&offset=0&limit=34
0.739 | 0.019 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).