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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:39:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Myotis daubentonii genome assembly, chromosome: 1.
OY725359.1:33849759-33849777
TAAATAGTGAGACTCTAGGGTTTGCAGATT33849759CTGGCTGCCTCTTGTTGAGAAAAAAATGCCAGTGCTCTTTCAGCAGCTT
Solanum melongena mRNA, clone: LS001B17, 3'end, expressed in ovary at anthesis.
FS017757.1:6-24
GCTCT6CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACACTTTTGC
TSA: Capsicum annuum MGMT_Contig7465, mRNA sequence.
JW057709.1:1055-1073
TTACTCTGTTCTTCTTGTATTCTCTGCTCT1055CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTTTTCACACTCTTGC
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:98351229-98351247
TTACTCTGTTCTTCTTGTATTCTCTGCTCT98351229CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTTTTCACACTCTTGC
Solanum lycopersicum Micro-Tom DNA, chromosome 4, draft genome sequence.
AP028938.1:52488636-52488654
TTACTCTGCTCTTCTTGTATTCTCTGCTCT52488636CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACGCTCTTGC
Solanum lycopersicum cultivar I-3 chromosome 4.
CP023760.1:51438136-51438154
TTACTCTGCTCTTCTTGTATTCTCTGCTCT51438136CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACGCTCTTGC
Solanum pennellii chromosome ch04, complete genome.
HG975443.1:62300035-62300053
TTACTCTGCTCTTCTTGTATTCTCTGCTCT62300035CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACGCTCTTGC
Solanum lycopersicum chromosome ch04, complete genome.
HG975516.1:50586341-50586359
TTACTCTGCTCTTCTTGTATTCTCTGCTCT50586341CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACGCTCTTGC
Triticum aestivum genome assembly, chromosome: 3A.
LR862514.1:180657804-180657822
GGAGGGGCATGACCAGCTGCTGGTGGTCAT180657804CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR862535.1:176987043-176987061
GGAGGGGCATGACCAGCTGCTGGTGGTCAT176987043CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR862556.1:178678917-178678935
GGAGGGGCATGACCAGCTGCTGGTGGTCAT178678917CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR865464.1:173265154-173265172
GGAGGGGCATGACCAGCTGCTGGTGGTCAT173265154CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR865506.1:181689694-181689712
GGAGGGGCATGACCAGCTGCTGGTGGTCAT181689694CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR865745.1:182465699-182465717
GGAGGGGCATGACCAGCTGCTGGTGGTCAT182465699CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR865766.1:179390151-179390169
GGAGGGGCATGACCAGCTGCTGGTGGTCAT179390151CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LR878441.1:184253363-184253381
GGAGGGGCATGACCAGCTGCTGGTGGTCAT184253363CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
LS992086.1:172659680-172659698
GGAGGGGCATGACCAGCTGCTGGTGGTCAT172659680CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum turgidum subsp. durum genome assembly, chromosome: 3A.
LT934115.1:178363674-178363692
GGAGGGGCATGACCAGCTGCTGGTGGTCAT178363674CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
OU015727.1:178059301-178059319
GGAGGGGCATGACCAGCTGCTGGTGGTCAT178059301CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
OU343171.1:180510110-180510128
GGAGGGGCATGACCAGCTGCTGGTGGTCAT180510110CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Solanum lycopersicum genome assembly, chromosome: 4.
OU640347.1:52345660-52345678
TTACTCTGCTCTTCTTGTATTCTCTGCTCT52345660CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACGCTCTTGC
Triticum aestivum genome assembly, chromosome: 3A.
OU963878.1:180206610-180206628
GGAGGGGCATGACCAGCTGCTGGTGGTCAT180206610CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
OV100743.1:180904862-180904880
GGAGGGGCATGACCAGCTGCTGGTGGTCAT180904862CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Triticum aestivum genome assembly, chromosome: 3A.
OW530316.1:180904862-180904880
GGAGGGGCATGACCAGCTGCTGGTGGTCAT180904862CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Solanum dulcamara genome assembly, chromosome: 1.
OX359252.1:11856161-11856179
TTACTCTGCTCTTCTTGTATTCTCTGCTCT11856161CTGGCTGCCTCTTGTTGAGCTCTTTTCTCACGTCTCTTCACACTCTTGC
Triticum aestivum genome assembly, chromosome: 3A.
OX637231.1:141500241-141500259
GGAGGGGCATGACCAGCTGCTGGTGGTCAT141500241CTGGCTGCCTCTTGTTGAGGCTTCAGTGCTGATGCATGAGGTTCACGGC
Xylocampa areola genome assembly, chromosome: 17.
OW285216.1:5214045-5214063
TCTAAGAGTTCCTGTTTGTCAGCCAATAAA5214045CTGGCTGCCTCTTGTTGAGCTGCGTGCACGCACTGTCGTAGAACTGACG
Dicrocoelium dendriticum genome assembly, chromosome: 5.
OX104067.1:41981910-41981928
AATAGTGTCTCACTAGTTGTGGTCACCCAA41981910CTGGCTGCCTCTTGTTGAGGTGGACTTTGATTCTGAGATATTAGAACAC
Cyprinus carpio genome assembly, scaffold: 000002137.
LN595513.1:145032-145050
GACATTTTTTTGTATGCTTCTCCCAAAAGG145032CTCAACAAGAGGCAGCCAGTGCATTTATTGAATTAGCAGCTAGCGGGAA
EST254074 tomato resistant, Cornell Solanum lycopersicum cDNA clone cLER4P3, mRNA sequence.
AI772974.1:264-282
CCAAGAGCGTGAAGAGACGTGAGAAAAGAG264CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
EST469078 tomato shoot/meristem Solanum lycopersicum cDNA clone cTOF1N8 5' sequence, mRNA sequence.
BG123432.1:140-158
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG140CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Solanum lycopersicum cDNA, clone: FA16AC09, 5' end, expressed in maturing fruit.
BP879927.1:245-263
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG245CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Solanum lycopersicum cDNA, clone: FA25AF11, 5' end, expressed in maturing fruit.
BP883211.1:231-249
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG231CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
SV5_55C06_SV5_55b_039 SV5 Solanum chacoense cDNA, mRNA sequence.
DN978856.1:535-553
NCAAGAGCGTGAAGAGACGTGAGAAAAGAG535CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Solanum melongena mRNA, clone: SEP08I24, 5'end, expressed in sepal at 10d after anthesis.
FS062901.1:491-509
GCAAAAGTGTGAAGAGACGTGAGAAAAGAG491CTCAACAAGAGGCAGCCAGAGGGCAAAGAATACAAGAAGAGCAGAGTAA
Solanum torvum mRNA, clone: TVR19N22, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS115977.1:304-322
GCAAAAGTGTGAAGAGACGTGAGAAAAGAG304CTCAACAAGAGGCAGCCAGAGAGCAAAGAATACAAGAAGAGCAGAGTAA
C_T3_064_F11_08MAR2005_085.1 LIPTC Solanum tuberosum cDNA clone C_T3_064_F11_08MAR2005_085, mRNA sequence.
JG728984.1:516-534
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG516CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Solanum tuberosum cultivar P8 chromosome 4.
CP046685.1:54094930-54094948
GCAAGAGCGTGAAGAGACGYGAGAAAAGAG54094930CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAR
Solanum tuberosum cultivar MSH/14-112 chromosome 4.
CP046699.1:54088673-54088691
GCAAGAGCGTGAAGAGACGYGAGAAAAGAG54088673CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAR
Solanum pinnatisectum cultivar CGN17745 chromosome 4.
CP047561.1:54075310-54075328
GCAAGAGCGTGAAGAGACGCGAGAAAAGAG54075310CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAG
Solanum tuberosum cultivar Solyntus chromosome 4.
CP055237.1:55512029-55512047
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG55512029CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:164132927-164132945
GCAAGAGTGTGAAAAGACGTGAGAAAAGAG164132927CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAACAGAGTAA
Solanum verrucosum cultivar 11H23 chromosome 4.
CP133615.1:49298039-49298057
GCAAGAGCGTGAAGAGACGTGAGAAAAGAG49298039CTCAACAAGAGGCAGCCAGAGAGCAGAGAATACAAGAAGAGCAGAGTAA
Triticum aestivum genome assembly, chromosome: 3A.
LR865485.1:179602582-179602600
GCCGTGAACCTCATGCATCAGCACTGAAGC179602582CTCAACAAGAGGCAGCCAGATGACCACCAGCAGCTGGTCATGCCCCTCC
Triticum aestivum genome assembly, chromosome: 3A.
LR877315.1:185061866-185061884
GCCGTGAACCTCATGCATCAGCACTGAAGC185061866CTCAACAAGAGGCAGCCAGATGACCACCAGCAGCTGGTCATGCCCCTCC
Triticum monococcum genome assembly, chromosome: 3A.
OY737852.1:198473306-198473324
GCCGTGAACCTCATGCATCAGCACTGAAGC198473306CTCAACAAGAGGCAGCCAGATGACCACAAGCAGCTGGTCACGCCCCTCC
Triticum monococcum genome assembly, chromosome: 3A.
OY737860.1:199681211-199681229
GCCGTGAACCTCATGCATCAGCACTGAAGC199681211CTCAACAAGAGGCAGCCAGATGATCACAAGCAGCTGGTCACGCCCCTCC
Triticum timopheevii genome assembly, chromosome: 3At.
OY997265.1:174718906-174718924
GCCGTGAACCTCATGCATCAGCACTGAAGC174718906CTCAACAAGAGGCAGCCAGATGACCACCAGCAGCTGGTCATGCCCCTCC
Sepia lycidas genome assembly, chromosome: 14.
OZ010584.1:122871723-122871741
CCACCACCGCGTCGTCATTGAATGGTGTGC122871723CTCAACAAGAGGCAGCCAGTATGAGTTGATTAGCCGACAACATGACAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGGCTGCCTCTTGTTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGGCTGCCTCTTGTTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.300 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=CTGGCTGCCTCTTGTTGAG&k=0&no_gap=0&offset=0&limit=50
1.067 | 0.767 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAACAAGAGGCAGCCAG&k=0&no_gap=0&offset=0&limit=22
1.081 | 0.014 | cgi_end;

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