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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 09:52:46, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cucumis melo subsp. melo EST, clone HS_08-A12-M13R.
AM724103.1:513-532
ATCGTCTACAATTTCCCTCACGTCGGGTTC513CTGTACCGCGAGGACAGTTTCTGCCAAATTCAATTGAACAAGGAATTGGT
Cucumis melo subsp. melo EST, clone 15d_23-G02-M13R.
AM736311.2:467-486
ATCGTCTACAATTTCCCTCACGTCGGGTTC467CTGTACCGCGAGGACAGTTTCTGCCAAATTC
F-493 Melon phloem library F Cucumis melo cDNA clone PH6B1, mRNA sequence.
EB714822.1:410-429
ATCGTCTACAATTTCCCTCACGTCGGGTTC410CTGTACCGCGAGGACAGTTTCTGCCAAATTCAATTGAACAAGGAATTGGT
EST11013010 CM-TEa library Cucumis melo cDNA clone TEa0010K18, mRNA sequence.
JG471297.1:494-513
ATCGTCTACAATTTCCCTCACGTCGGGTTC494CTGTACCGCGAGGACAGTTTCTGCCAAATTCAATTGAACAAGGAATTGGT
EST11035577 MNRP2 library Cucumis melo cDNA clone CA13YI06FM1, mRNA sequence.
JG493864.1:161-180
ATCGTCTACAATTTCCCTCACGTCGGGTTC161CTGTACCGCGAGGACAGTTTCTGCCAAATTCAATTGAACAAGGAATTGGT
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_780, mRNA sequence.
JW918949.1:540-559
ATCGTCTACAATTTCCCTCACGTCGGGTTC540CTGTACCGCGAGGACAGTTTCTGCCAAATTCAATTGAACAAGGAATTGGT
Cucumis melo isolate PI 511890 chromosome 8.
CP136107.1:6652177-6652196
AAAGAAGAAGATCGATACTGAATTTGGCAG6652177AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar Allsugar chromosome 1.
CP155009.1:33347478-33347497
AAGAAGAAGATCGATTACTGAATTTGGCAG33347478AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar Charleston Gray chromosome 1.
CP155142.1:33531301-33531320
AAGAAGAAGATCGATTACTGAATTTGGCAG33531301AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar Calhoun Gray chromosome 1.
CP155153.1:33506827-33506846
AAGAAGAAGATCGATTACTGAATTTGGCAG33506827AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar PKR6 chromosome 1.
CP155164.1:33611117-33611136
AAGAAGAAGATCGATTACTGAATTTGGCAG33611117AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar Sugarlee chromosome 1.
CP155175.1:33506052-33506071
AAGAAGAAGATCGATTACTGAATTTGGCAG33506052AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar ShiHongNo2 chromosome 1.
CP155186.1:33529489-33529508
AAGAAGAAGATCGATTACTGAATTTGGCAG33529489AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar PI 288522 chromosome 1.
CP155197.1:33410178-33410197
AAGAAGAAGATCGATTACTGAATTTGGCAG33410178AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar DaBanHongZiGua chromosome 1.
CP155208.1:33375515-33375534
AAGAAGAAGATCGATTACTGAATTTGGCAG33375515AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar PI 381740 chromosome 1.
CP155219.1:33236476-33236495
AAGAAGAAGATCGATTACTGAATTTGGCAG33236476AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar SanBaiGua chromosome 1.
CP155230.1:33227404-33227423
AAGAAGAAGATCGATTACTGAATTTGGCAG33227404AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar PI 254622 chromosome 1.
CP155241.1:33505476-33505495
AAGAAGAAGATCGATTACTGAATTTGGCAG33505476AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus cultivar HeiShanRen chromosome 1.
CP155252.1:33259081-33259100
AAGAAGAAGATCGATTACTGAATTTGGCAG33259081AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus amarus cultivar PI 296341-FR chromosome 1.
CP155263.1:34008940-34008959
AAGAAGAAGATCGATTACTGAATTTGGCAG34008940AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus amarus cultivar PI 189225 chromosome 1.
CP155274.1:34757960-34757979
AAGAAGAAGATCGATTACTGAATTTGGCAG34757960AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus amarus cultivar RCAT 055816 chromosome 1.
CP155285.1:34252128-34252147
AAGAAGAAGATCGATTACTGAATTTGGCAG34252128AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus amarus cultivar PI 271769 chromosome 1.
CP155296.1:34008004-34008023
AAGAAGAAGATCGATTACTGAATTTGGCAG34008004AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 1.
CP155307.1:33584235-33584254
AAGAAGAAGATCGATTACTGAATTTGGCAG33584235AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus amarus cultivar PI 482276 chromosome 1.
CP155318.1:34393326-34393345
AAGAAGAAGATCGATTACTGAATTTGGCAG34393326AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 1.
CP155329.1:34337896-34337915
AAGAAGAAGATCGATTACTGAATTTGGCAG34337896AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus colocynthis cultivar PI 537300 chromosome 4.
CP155343.1:33575743-33575762
AAGAAGAAGATCGATTACTGAATTTGGCAG33575743AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus colocynthis cultivar PI 525081 chromosome 4.
CP155354.1:33445323-33445342
AAGAAGAAGATCGATTACTGAATTTGGCAG33445323AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus naudinianus cultivar PI 596694M chromosome 4.
CP155365.1:31127348-31127367
AAGAAGAAGATCGATTACTGAATTTGGCAG31127348AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus colocynthis cultivar PI 652554 chromosome 4.
CP155376.1:31598793-31598812
AAGAAGAAGATCGATTACTGAATTTGGCAG31598793AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAGTTGTAGATGAT
Citrullus colocynthis cultivar PI 632755 chromosome 4.
CP155387.1:33491355-33491374
AAGAAGAAGATCGATTACTGAATTTGGCAG33491355AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus rehmii cultivar PI 670011 chromosome 4.
CP155398.1:35451470-35451489
AAGAAGAAGATCGATTACTGAATTTGGCAG35451470AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Cucumis melo genomic scaffold, anchoredscaffold00007.
LN681875.1:6671407-6671426
AAAGAAGAAGATCGATACTGAATTTGGCAG6671407AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Cucumis melo genomic chromosome, chr_8.
LN713262.1:6671407-6671426
AAAGAAGAAGATCGATACTGAATTTGGCAG6671407AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAATTGTAGACGAT
Citrullus colocynthis genome assembly, chromosome: 4.
OZ021738.1:31579819-31579838
AAGAAGAAGATCGATTACTGAATTTGGCAG31579819AAACTGTCCTCGCGGTACAGGAACCCGACGTGAGGGAAGTTGTAGACGAT
Clostera curtula genome assembly, chromosome: 21.
FR997815.1:1192332-1192351
CATATTTGTGTTCGTGAATTGCATGTGGGT1192332AAACTGTCCTCGCGGTACAGGTAATGCAGGGATTTCGTTTTAAAAAAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGTACCGCGAGGACAGTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTACCGCGAGGACAGTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.636 | 0.627 | search_plus_done; http://172.18.8.135:50800/match?q=CTGTACCGCGAGGACAGTTT&k=0&no_gap=0&offset=0&limit=50
0.813 | 0.177 | search_minus_done; http://172.18.8.135:50800/match?q=AAACTGTCCTCGCGGTACAG&k=0&no_gap=0&offset=0&limit=44
0.833 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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