GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:01:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:293788125-293788144
ATTCTTAGCTCCACCAAGACTGTGAGAAAG293788125CTGTACTTCTGTTCGGCATGGACCTGGTGGCCCAATTCCATGTGAAACAG
TSA: Cannabis sativa PK24718.1_1.CasaPuKu mRNA sequence.
JP450191.1:5974-5993
CTGTTTCACATGGAATTGGGCCCCCAGGTC5974CATGCCGAACAGAAGTACAGCTTTCTCACGGTCTTGGCGGAGCTGAGAAC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq1.
LA671801.1:6472-6491
CTGTTTCACATGGAATTGGGCCACCAGGTC6472CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq2.
LA671802.1:6777-6796
CTGTTTCACATGGAATTGGGCCACCAGGTC6777CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq4.
LA671803.1:6477-6496
CTGTTTCACATGGAATTGGGCCACCAGGTC6477CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq5.
LA671804.1:6616-6635
CTGTTTCACATGGAATTGGGCCACCAGGTC6616CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq6.
LA671805.1:6472-6491
CTGTTTCACATGGAATTGGGCCACCAGGTC6472CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq7.
LA671806.1:6394-6413
CTGTTTCACATGGAATTGGGCCACCAGGTC6394CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq8.
LA671807.1:6694-6713
CTGTTTCACATGGAATTGGGCCACCAGGTC6694CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq11.
LA671810.1:6616-6635
CTGTTTCACATGGAATTGGGCCACCAGGTC6616CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq12.
LA671811.1:6699-6718
CTGTTTCACATGGAATTGGGCCACCAGGTC6699CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq13.
LA671812.1:6394-6413
CTGTTTCACATGGAATTGGGCCACCAGGTC6394CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq14.
LA671813.1:6694-6713
CTGTTTCACATGGAATTGGGCCACCAGGTC6694CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq15.
LA671814.1:6699-6718
CTGTTTCACATGGAATTGGGCCACCAGGTC6699CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq16.
LA671815.1:6777-6796
CTGTTTCACATGGAATTGGGCCACCAGGTC6777CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq19.
LA671818.1:6477-6496
CTGTTTCACATGGAATTGGGCCACCAGGTC6477CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq20.
LA671819.1:6555-6574
CTGTTTCACATGGAATTGGGCCACCAGGTC6555CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq22.
LA671821.1:6555-6574
CTGTTTCACATGGAATTGGGCCACCAGGTC6555CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq23.
LA671822.1:6555-6574
CTGTTTCACATGGAATTGGGCCACCAGGTC6555CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296176_c2_seq24.
LA671823.1:6777-6796
CTGTTTCACATGGAATTGGGCCACCAGGTC6777CATGCCGAACAGAAGTACAGCTTTCTCACAGTCTTGGTGGAGCTAAGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTACTTCTGTTCGGCATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTACTTCTGTTCGGCATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTACTTCTGTTCGGCATG&k=0&no_gap=0&offset=0&limit=50
0.498 | 0.406 | search_minus_done; http://172.18.8.135:50400/match?q=CATGCCGAACAGAAGTACAG&k=0&no_gap=0&offset=0&limit=49
0.510 | 0.012 | cgi_end;

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