GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 01:02:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3C890JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767904.1:368-389
TTTTGTAACCCTGCGGAATTTTTTGAGTTT368CTGTGCATAAGCCATTGAGTCCAGTTTCATCTTGTGATCTTTCTTTGAAAGC
RR1FT06JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD531827.1:311-332
TTTGGTAACCCTGCGGAATTCTTTGAGTTT311CTGTGCATAAGCCATTGAGTCCAGTTTCTTCTTGTGATCTTTCTTTGAAAGC
RS1EW32JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD566131.1:329-350
TTTGGTAACCCTGCGGAATTTTTTGAGTTT329CTGTGCATAAGCCATTGAGTCCAGTTTCTTCTTGTGATCTTTCTTTGAAAGC
RS1FV19JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934347.1:302-323
TTTGGTAACCCTGCGGAATTTTTTGAGTTT302CTGTGCATAAGCCATTGAGTCCAGTTTCTTCTTGTGATCTTTCTTTGAAAGC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:43910855-43910876
TTTGGTAACCCTGCGGAATTTTTTGAGTTT43910855CTGTGCATAAGCCATTGAGTCCAGTTTCTTCTTGTGATCTTTCTTTGAAAGC
RS1AV45TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW718288.1:360-381
GCTTTCAAAGAAAGATCACAAGAAGAAACT360GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RS2AU71TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725762.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RR1CF20TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748734.1:13-34
CAAGAAGAAACT13GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RR3C890TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX763874.1:193-214
GCTTTCAAAGAAAGATCACAAGATGAAACT193GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACAAAA
RS2D393TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX898215.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RR1DL37TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898585.1:356-377
GCTTTCAAAGAAAGATCACAAGAAGAAACT356GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RR1DP12TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898927.1:355-376
GCTTTCAAAGAAAGATCACAAGAAGAAACT355GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RR1FT06TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD536335.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAGAATTCCGCAGGGTTACCAAA
RR2FE03TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD542853.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACAAAA
RS1EW32TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD562161.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RS1FV19TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD937802.1:356-377
GCTTTCAAAGAAAGATCACAAGAAGAAACT356GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
RS1GO12TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940325.1:357-378
GCTTTCAAAGAAAGATCACAAGAAGAAACT357GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA
Branchiostoma floridae DNA, clone: CH302-056B24.R, genomic survey sequence.
DE035607.1:10-31
GATAACTCT10GGACTCAATGGCTTATGCACAGACAAGATGTCTTTCTTCCACACACAACATG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:122093-122114
GCTTTCAAAGAAAGATCACAAGAAGAAACT122093GGACTCAATGGCTTATGCACAGAAACTCAAAAAATTCCGCAGGGTTACCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTGCATAAGCCATTGAGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTGCATAAGCCATTGAGTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.425 | 0.417 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTGCATAAGCCATTGAGTCC&k=0&no_gap=0&offset=0&limit=50
1.494 | 1.069 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTCAATGGCTTATGCACAG&k=0&no_gap=0&offset=0&limit=45
1.503 | 0.009 | cgi_end;

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