GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:27:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Apteryx australis mantelli genome assembly, scaffold: scaffold95.
LK064812.1:6664475-6664494
TCAGTAATGTCTAAGGGCATCACGAAAAGT6664475CTGTGGAGGGTACAAGGTGGAAGTCCTCAGTTCCTTAGTCATAATTTCCC
Musa acuminata subsp. malaccensis isolate AA chromosome 3.
CP126372.1:27687039-27687058
CTGCAGTAGTTATGGCGCCGAGGTGCTCAC27687039CTGTGGAGGGTACAAGGTGGGCGACGGAGTCAGGGAAGGGGAGGAGGAGG
Musa acuminata subsp. malaccensis isolate AA chromosome 14.
CP126383.1:27540933-27540952
CTGCAGTAGTTATGGCGCCGAGGTGCTCAC27540933CTGTGGAGGGTACAAGGTGGGCGACGGAGTCAGGGAAGGGGAGGAGGAGG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A03.
HG996468.1:24754674-24754693
CTGCAGTAGTTATGGCGCCGAGGTGCTCAC24754674CTGTGGAGGGTACAAGGTGGGCGACGGAGTCAGGGAAGGGGAGGAGGAGG
Musa troglodytarum cultivar karat chromosome 3.
CP097505.1:28478292-28478311
CCTCCTCCTCCCCTTCCCTGACTCCGTCGC28478292CCACCTTGTACCCTCCACAGGTGAGCACCTCGGCGCCATAACTACTGCAG
Musa schizocarpa genome assembly, chromosome: S03.
LS990917.1:28932131-28932150
CCTCCTCCTCCCCTTCCCTGACTCCGTCGC28932131CCACCTTGTACCCTCCACAGGTGAGCACCTCGGCGCCATAACTACTGCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTGGAGGGTACAAGGTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTGGAGGGTACAAGGTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTGGAGGGTACAAGGTGG&k=0&no_gap=0&offset=0&limit=50
0.144 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=CCACCTTGTACCCTCCACAG&k=0&no_gap=0&offset=0&limit=46
0.145 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).