GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:46:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rana temporaria genome assembly, chromosome: 12.
LR991691.1:127777508-127777527
ACTGTTAAGATTATTTTCTTTTGCGATTGA127777508CTGTGTATGTGCTTTGTGCTGTGTTCTACTTATCATCTGGGTCCTATTAT
TSA: Pyrus x bretschneideri Unigene60722_XinShao mRNA sequence.
JR648845.1:39-58
TGAGCCCCAATAGTTAGCTTATACTGTTTC39CTGTGTATGTGCTTTGTGCTCCCTTCAGTTTCTTTCATCTTTCTAAAGTC
Molanna angustata genome assembly, chromosome: 4.
OY754968.1:22727768-22727787
TTGTATTCTGAAAGTTTCATCACAATGTAT22727768CTGTGTATGTGCTTTGTGCTATGTGCTATGTGCTATGTATGACGTATTCA
Molanna angustata genome assembly, chromosome: 9.
OY754973.1:19254431-19254450
TTGTATACTGAAAGTTTCATCACTATGTAT19254431CTGTGTATGTGCTTTGTGCTGTGCGCTGTGTGCTATGTACGGCGTGTTCA
Onychomys torridus genome assembly, chromosome: 7.
LR877194.1:79803275-79803294
AGGGGACCTGACGCCCTCTTCTGGTCCATA79803275AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACACTC
Onychomys arenicola genome assembly, chromosome: 7.
OX460353.1:80762791-80762810
AGGGGACCTGACGCCCTCTTCTGGTCCATA80762791AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACGCTC
Onychomys leucogaster genome assembly, chromosome: 7.
OX460377.1:81218462-81218481
AGGGGACCTGATGCCCTCTTCTGGTCCATA81218462AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACACTC
Onychomys leucogaster genome assembly, chromosome: 7.
OX460424.1:79852848-79852867
AGGGGACCTGATGCCCTCTTCTGGTCCATA79852848AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACACTC
Onychomys arenicola genome assembly, chromosome: 7.
OX460448.1:82218215-82218234
AGGGGACCTGACGCCCTCTTCTGGTCCATA82218215AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACGCTC
Onychomys torridus genome assembly, chromosome: 7.
OX460888.1:79803275-79803294
AGGGGACCTGACGCCCTCTTCTGGTCCATA79803275AGCACAAAGCACATACACAGTATACTTACATACATGCAAGGAAAACACTC
Mastacembelus armatus genome assembly, chromosome: 1.
LR535833.1:21135347-21135366
TGCTCTCTGATACGCTGTCCTCCTGAAACA21135347AGCACAAAGCACATACACAGTTAAGTGAAGCAAAACAAACATTAGATTTT
Oegoconia quadripuncta genome assembly, chromosome: 10.
OX438751.1:3967538-3967557
TGAATAATGTTATTGTAATGAAACTTTACA3967538AGCACAAAGCACATACACAGATCTGAAAAGTATATTTGTCTATCGATCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTGTATGTGCTTTGTGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTGTATGTGCTTTGTGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.262 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTGTATGTGCTTTGTGCT&k=0&no_gap=0&offset=0&limit=50
0.358 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=AGCACAAAGCACATACACAG&k=0&no_gap=0&offset=0&limit=46
0.363 | 0.005 | cgi_end;

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