GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:55:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys russatus genome assembly, chromosome: 26.
LR877237.1:36970173-36970192
CCGTACTTCCTGAGAAGGAACCGCTCCCCT36970173CTGTGTCAGCAGAGAGCAGCCAAGATAGCGCAGACCTGGAAAACAGTCTG
Heterocephalus glaber genome assembly, chromosome: 14.
OX090954.1:24388984-24389003
ACGTGGCACCCACCTCGCAGAGCGGTCACA24388984CTGTGTCAGCAGAGAGCAGCCCAGTGGGTAGTTCGTAGCATTCCCAGGCA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 33.
OX459969.2:31789730-31789749
CACTGCTACATCTCTTGGATTTTACATACT31789730CTGTGTCAGCAGAGAGCAGCATGAGGGAACAGGAGCCAAGAAGAGAAGAC
Labrus bergylta genome assembly, chromosome: 11.
OZ005719.1:24316627-24316646
GTTTAGGCTTGCAGTGACTGTCCCTCATCT24316627CTGTGTCAGCAGAGAGCAGCGCTTCACGCCTGCTGTACAGAGGTGCAAGT
Porphyra yezoensis cDNA, clone:PFL016d06_r, 5'end.
AU191425.1:203-222
CCGCTGTCGCCCTCCGCCGCGCCGACAGCG203CTGTGTCAGCAGAGAGCAGCTTCTCTTCCGCCTCCTACGGGCCGCCGCCA
Rattus norvegicus clone CH230-307O19, WORKING DRAFT SEQUENCE.
AC132962.4:1786-1805
TGGCTATGAAGGAAGAGTCCTGAAAGGGAT1786CTGTGTCAGCAGAGAGCAGCTGATTAGAATCTCAATACTGTGCAGAGACT
Acomys kempi genome assembly, chromosome: 12.
OU015366.1:15386648-15386667
CAGACTGTTTTCAGGGTCTGCGCTATCTTG15386648GCTGCTCTCTGCTGACACAGAGGGAAGTGGTTGCTTCTCAGGGAGTACGG
Acomys dimidiatus genome assembly, chromosome: 11.
OU015384.1:15223881-15223900
CAGACTGTTTTCAGGGTCTGCGCTATCTTG15223881GCTGCTCTCTGCTGACACAGAGGGGAGTGGTTGCTTCTCAGGGAGTACGG
Heterocephalus glaber genome assembly, chromosome: 14.
OX090922.1:73914017-73914036
TGCCTGGGAATGCTACGAACTACCCACTGG73914017GCTGCTCTCTGCTGACACAGTGTGACCGCTCTGCGAGGTGGGTGCCACGT
Heterocephalus glaber genome assembly, chromosome: 21.
OZ001086.1:73921017-73921036
TGCCTGGGAATGCTACGAACTACCCACTGG73921017GCTGCTCTCTGCTGACACAGTGTGACCGCTCTGCGAGGTGGGTGCCACGT
Heterocephalus glaber genome assembly, chromosome: 21.
OZ001129.1:73859998-73860017
TGCCTGGGAATGCTACGAACTACCCACTGG73859998GCTGCTCTCTGCTGACACAGTGTGACCGCTCTGCGAGGTGGGTGCCACGT
Micromys minutus genome assembly, chromosome: 2.
OZ004782.1:83625522-83625541
CATGGAACCCCACCAACCCCACCTGATGCT83625522GCTGCTCTCTGCTGACACAGGCTGGACCTCCCACAATGTGTTAGGAAATA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 33.
OX596117.1:16950189-16950208
GTCTTCTCTTCTTGGCTCCTGTTCCCTCAT16950189GCTGCTCTCTGCTGACACAGAGTATGTAAAATCCAAGAGATGTAGCAGTG
Streptopelia turtur genome assembly, chromosome: 8.
LR594559.1:6899342-6899361
CTTTTTGGGGGTTTCAGTTGATCCTACCCT6899342GCTGCTCTCTGCTGACACAGAGCTCCAGGCCAGGTCCTTACACAAAGAGT
Thalassophryne amazonica genome assembly, chromosome: 15.
LR722980.1:33321791-33321810
ACACCTCACTGCTTCGCCGCTTTACCTGTG33321791GCTGCTCTCTGCTGACACAGTGGGTCTTTCTTCCTGCTAACAGCCTCCAG
Trachurus trachurus genome assembly, chromosome: 8.
LR991642.1:2165714-2165733
GTCCAACGCCTTAACCACTCGGCCATCACA2165714GCTGCTCTCTGCTGACACAGTCAACCTGTGAACACTGTAATTATTCTAAC
Nesoenas mayeri genome assembly, chromosome: 8.
OY720064.1:9378111-9378130
CTTTTTGTGGGTTTCAGTTGATCCTACCCT9378111GCTGCTCTCTGCTGACACAGAGCTCCAGGCCAGGTCCTTACACAAAGAGT
Rattus norvegicus clone CH230-293G6, WORKING DRAFT SEQUENCE.
AC115559.4:139710-139729
AGTCTCTGCACAGTATTGAGATTCTAATCA139710GCTGCTCTCTGCTGACACAGATCCCTTTCAGGACTCTTCCTTCATAGCCA
Rattus norvegicus clone CH230-399E23, WORKING DRAFT SEQUENCE.
AC130239.4:48418-48437
AGTCTCTGCACAGTATTGAGATTCTAATCA48418GCTGCTCTCTGCTGACACAGATCCCTTTCAGGACTCTTCCTTCATAGCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTGTCAGCAGAGAGCAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTGTCAGCAGAGAGCAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.341 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTGTCAGCAGAGAGCAGC&k=0&no_gap=0&offset=0&limit=50
0.476 | 0.135 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGCTCTCTGCTGACACAG&k=0&no_gap=0&offset=0&limit=44
0.485 | 0.008 | cgi_end;

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