GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 16:01:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

sai70b09.y1 Gm-c1068 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1068-3906 5' similar to TR:O81289 O81289 T14P8.22 PROTEIN, mRNA sequence.
BI974565.1:132-151
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC132CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
sal64g12.y1 Gm-c1061 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1061-4151 5' similar to TR:O81289 O81289 T14P8.22 PROTEIN, mRNA sequence.
BM527697.1:15-34
GCCACGCCGGCCTC15CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
sam68d04.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-4400 5' similar to TR:O81289 O81289 T14P8.22 PROTEIN, mRNA sequence.
BM953970.1:272-291
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC272CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
Glycine max cDNA clone: GMFL01-27-N16, 5'end.
BW667683.1:290-309
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC290CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
Glycine max cDNA clone: GMFL01-43-B16, 5'end.
BW678147.1:283-302
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC283CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
Glycine max cDNA, clone: GMFL02-03-F11, 5'end.
DB956283.1:280-299
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC280CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
Glycine max cDNA, clone: GMFL02-20-G13, 5'end.
DB962405.1:283-302
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC283CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
ocpsga0_0072_A05.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO014158.1:364-383
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC364CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
ocpsga0_0134_B06.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO018897.1:286-305
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC286CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
ocpsga0_0323_E06.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO033461.1:291-310
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC291CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
abg41c12.x1 Soybean random, unfiltered genomic library Glycine max genomic, genomic survey sequence.
CL897073.1:134-153
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC134CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
Glycine max cDNA, clone: GMFL01-27-N16.
AK245348.1:290-309
TGCTGCCCCGGCCTCCGCCACGCCGGCCTC290CTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAA
454GmaGlobSeed14373 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK279741.1:27-46
CGGGGCCGAGGTCGCGTTCGAGGCCG27AAATCGGAGGTGTCGAACAGGAGGCCGGCGTGGCGGAGGCCGGGGCAGCA
454GmaGlobSeed415449 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD672800.1:54-73
TTGCCGGGGCCGAGGTCGCGTTCGAGGCCG54AAATCGGAGGTGTCGAACAGGAGGCCGGCGTGGCGGAGGCCGGGGCAGCA
454GmaGlobSeed421461 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD678812.1:179-198
TTGCCGGGGCCGAGGTCGCGTTCGAGGCCG179AAATCGGAGGTGTCGAACAGGAGGCCGGCGTGGCGGAGGCCGGGGCAGCA
454GmaGlobSeed578472 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD835823.1:177-196
GTTGCCGGGCCGAGGTCGCGTTCGAGGCCG177AAATCGGAGGTGTCGAACAGGAGGCCGGCGTGGCGGAGGCCGGGGCAGCA
Glycine max cultivar Williams 82 chromosome 3.
CP126428.1:44965371-44965390
TTGCCGGGGCCGAGGTCGCGTTCGAGGCCG44965371AAATCGGAGGTGTCGAACAGGAGGCCGGCGTGGCGGAGGCCGGGGCAGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGTTCGACACCTCCGATTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTTCGACACCTCCGATTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.709 | 0.700 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTTCGACACCTCCGATTT&k=0&no_gap=0&offset=0&limit=50
1.103 | 0.394 | search_minus_done; http://172.18.8.135:50400/match?q=AAATCGGAGGTGTCGAACAG&k=0&no_gap=0&offset=0&limit=38
1.106 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).