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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 09:45:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6338.
FX700879.1:409-430
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG409CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_25964.
FX740843.1:375-396
ACCGTTTTGCCCGGACTCCCCGAGGCTGAG375CTTAGACATGCCAAGAAGCTGATCAACATTAATCGGGGCTGCTTTTGAGTGC
TSA: Raphanus sativus RS23065 mRNA sequence.
JT807612.1:344-365
ACCGTTTTGCCCGGACTCCCCGAGGCTGAG344CTTAGACATGCCAAGAAGCTGATCAACATTAATCGGGGCTGCTTTTGAGTGC
BOHBX61TF BOHB Brassica oleracea genomic clone BOHBX61, genomic survey sequence.
BH554031.1:358-379
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG358CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
oeh23b12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ018884.1:527-548
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG527CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
Brassica oleracea, *** SEQUENCING IN PROGRESS ***.
AC183497.1:278229-278250
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG278229CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
Brassica napus clone JBnB187B24, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC236897.1:101993-102014
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG101993CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
Brassica napus clone JBr037K23, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.
AC236899.1:63376-63397
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG63376CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:40160596-40160617
ACCGTTTTGGCTAGACTCCCCGAGGCTGAG40160596CTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGC
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:34624066-34624087
ACCGTTTTGCCCGGACTCCCCGAGGCTGAG34624066CTTAGACATGCCAAGAAGCTGATCAACATTAATCGGGGCTGCTTTTGAGTGC
Brassica oleracea var. viridis mRNA, clone: KALE-155K09, 3' end sequence.
DK574635.1:280-301
GCACTCAAAAGCCGCCCCTATTAATGTTGA280TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
BNSCS5CT_UP_090_H10_29MAY2007_066 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV084083.1:252-273
GCACTCAAAAGCCGCCCCTATTAATGTTGA252TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
BR086165 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-023G03 5', mRNA sequence.
EX099875.1:131-152
GCACTCAAAAGCCGCCCCTATTAATGTTGA131TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
RR2EE26TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY909024.1:609-630
GCACTCAAAAGCAGCCCCGATTAACGTTGA609TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGT
RS2FE25TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570418.1:566-587
GCACTCAAAAGCAGCCCCGATTAATGTTGA566TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCCGGGCAAAACGGT
RR1GW25TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD964964.1:467-488
GCACTCGAAAGCAGCCCCGATTAATGTTGA467TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCCGGGCAAAACGGT
BN18DYSC_UP_040_H04_19FEB2008_018 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG556422.1:616-637
GCACTCAAAAGCCGCCCCTATTAATGTTGA616TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_17650.
FX659119.1:1027-1048
GCACTCAAAAGCAGCCCCGATTAATGTTGA1027TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCCGGGCAAAACGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_32292.
FX735160.1:1031-1052
GCACTCAAAAGCCGCCCCTATTAATGTTGA1031TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
BOMGN42TF BO_2_3_KB Brassica oleracea genomic clone BOMGN42, genomic survey sequence.
BH669045.1:636-657
GCACTCAAAAGCCGCCCCTATTAATGGTGA636TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGG
Brassica napus GSS, clone JBnB055L10, end read, primer SACL2(forward).
CU944612.1:298-319
GCACTCAAAAGCCGCCCCTATTAATGTTGA298TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:10209917-10209938
GCACTCAAAAGCCGCCCCTATTAATGTTGA10209917TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:10401897-10401918
GCACTCAAAAGCCGCCCCTATTAATGTTGA10401897TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:16555161-16555182
GCACTCAAAAGCCGCCCCTATTAATGTTGA16555161TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Brassica rapa genome, scaffold: A01.
LR031571.1:10176476-10176497
GCACTCAAAAGCCGCCCCTATTAATGTTGA10176476TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:16497688-16497709
GCACTCAAAAGCCGCCCCTATTAATGTTGA16497688TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:8994068-8994089
GCACTCAAAAGCAGCCCCGATTAATGTTGA8994068TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCCGGGCAAAACGGT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:10200195-10200216
GCACTCAAAAGCCGCCCCTATTAATGTTGA10200195TCAGCTTCTTGGCATGTCTAAGCTCAGCCTCGGGGAGTCTAGCCAAAACGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTAGACATGCCAAGAAGCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTAGACATGCCAAGAAGCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.400 | 0.391 | search_plus_done; http://172.18.8.135:50400/match?q=CTTAGACATGCCAAGAAGCTGA&k=0&no_gap=0&offset=0&limit=50
1.084 | 0.684 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGCTTCTTGGCATGTCTAAG&k=0&no_gap=0&offset=0&limit=40
1.096 | 0.012 | cgi_end;

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