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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:55:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:15894825-15894844
ATACCTAATGGCAGCCCCTCAGTGAATCAA15894825CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGAGCGTCAGTG
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:16551089-16551108
ATACTTAATGGCAGCCCCTCAGTGAGTCAA16551089CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGGCGTCAGTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460375.1:16370512-16370531
ATACCTAATGGCAGCCTCTCAGTGAGTCAA16370512CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGGCGTCAATG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460398.1:129713488-129713507
ATACCTAATGGCAGCCCCTCAGTGAGTCAC129713488CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGGTGTCAGTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460422.1:16881302-16881321
GCCTGTGGAAGATGCCTCTCAGTGAGTCAA16881302CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGACGTCAATG
Onychomys arenicola genome assembly, chromosome: 5.
OX460446.1:16965633-16965652
ATACTTAATGGCAGCCCCTCAGTGAGTCAA16965633CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGGCGTCAGTG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460470.1:132250896-132250915
ATACCTAATGGCAGCCCCTCAGTGAGTCAC132250896CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGGGTGTCAGTG
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:15894825-15894844
ATACCTAATGGCAGCCCCTCAGTGAATCAA15894825CTTAGAGTGAAGTGTATGGCATCTATTGTGAACTGAGTGGAGCGTCAGTG
Rhinatrema bivittatum genome assembly, chromosome: 9.
LR584395.1:91065489-91065508
AGTAGCAACAGTGGGTTGAACACCCTAAGG91065489CTTAGAGTGAAGTGTATGGCAGCAAGCACAGTACTATTAAGACCACCATA
WS0403.C21_G14 SS-S-25 Picea sitchensis cDNA clone WS0403_G14 3', mRNA sequence.
ES262734.1:125-144
AGGAATACCGTTATGCCAGTCTCCAGGAGC125CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAGGAACCTGT
WS0403.C21_K10 SS-S-25 Picea sitchensis cDNA clone WS0403_K10 3', mRNA sequence.
ES262811.1:160-179
AGGAATACCGTTATGCCAGTCTCCAGGAGC160CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAGGAACCTGT
WS0404.C21_J22 SS-S-25 Picea sitchensis cDNA clone WS0404_J22 3', mRNA sequence.
ES263105.1:153-172
AGGAATACCGTTATGCCAGTCTCCAGGAGC153CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAGGAACCTGT
WS0422.C21_L12 SS-NE-27 Picea sitchensis cDNA clone WS0422_L12 3', mRNA sequence.
ES668303.1:216-235
AGGAATACCGTTATGCCAGTCTCCGGGAGC216CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS04218.C21_A13 SS-NE-27 Picea sitchensis cDNA clone WS04218_A13 3', mRNA sequence.
FD741538.1:215-234
AGGAATACCGTTATGCCAGTCTCCAGGAGC215CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAGGAACCTGT
WS04218.C21_F21 SS-NE-27 Picea sitchensis cDNA clone WS04218_F21 3', mRNA sequence.
FD741653.1:222-241
AGGAATACCGTTATGCCAGTCTCCGGGAGC222CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS04219.C21_G03 SS-NE-27 Picea sitchensis cDNA clone WS04219_G03 3', mRNA sequence.
FD742026.1:214-233
AGGAATACCGTTATGCCAGTCTCCGGGAGC214CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS04223.C21_B23 SS-NE-27 Picea sitchensis cDNA clone WS04223_B23 3', mRNA sequence.
FD743374.1:146-165
AGGAATACCGTTATGCCAGTCTCCGGGAGC146CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS04225.C21_N08 SS-NE-27 Picea sitchensis cDNA clone WS04225_N08 3', mRNA sequence.
FD744354.1:194-213
AGGAATACCGTTATGCCAGTCTCCGGGAGC194CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS04228.C21_L21 SS-NE-27 Picea sitchensis cDNA clone WS04228_L21 3', mRNA sequence.
FD745403.1:219-238
AGGAATACCGTTATGCCAGTCTCCAGGAGC219CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAGGAACCTGT
WS04232.C21_D15 SS-NE-27 Picea sitchensis cDNA clone WS04232_D15 3', mRNA sequence.
FD746662.1:199-218
AGGAATACCGTTATGCCAGTCTCCGGGAGC199CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS0432.C21_D09 SS-NE-28 Picea sitchensis cDNA clone WS0432_D09 3', mRNA sequence.
FD747327.1:55-74
AGGAATACCGTTATGCCAGTCTCCGGGAGC55CTTAGAGTGAAGTGTATGGCAGAGGCAGATCAGCAGCCAAAAGAACCTGT
WS0431.C21_G12 SS-NE-28 Picea sitchensis cDNA clone WS0431_G12 3', mRNA sequence.
FD747080.1:576-595
ACAGGTTCTTTTGGCTGCTGATCTGCCTCT576GCCATACACTTCACTCTAAGGCTCCCGGAGACTGGCATAACGGTATTCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTAGAGTGAAGTGTATGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTAGAGTGAAGTGTATGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.950 | 0.941 | search_plus_done; http://172.18.8.135:50400/match?q=CTTAGAGTGAAGTGTATGGC&k=0&no_gap=0&offset=0&limit=50
1.125 | 0.176 | search_minus_done; http://172.18.8.135:50400/match?q=GCCATACACTTCACTCTAAG&k=0&no_gap=0&offset=0&limit=29
1.126 | 0.001 | cgi_end;

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