GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:49:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

84-L109828-1033-175-G21-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-175-G21 5', genomic survey sequence.
JY393292.1:204-223
TTTGTTTTGCATCTAGCAACTGTACCCAAA204CTTAGTGCCTTGAAGGCTTGAATCTCACAATCCAGCATATTGTAATCTCT
Esperia sulphurella genome assembly, chromosome: 25.
OX352282.1:3688852-3688871
GAGAGCCTTAAAGGCTATCGAGCCTTGAAG3688852CTTAGTGCCTTGAAGGCTTGAGCCTTTAAGGCTTGGTAGCTGCGGCTGGA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:437295-437314
AGAGATTACAATATGCTGGATTGTGAGATT437295CAAGCCTTCAAGGCACTAAGTTTGGGTACAGTTGCTAGATGCAAAACAAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:419258-419277
AGAGATTACAATATGCTGGATTGTGAGATT419258CAAGCCTTCAAGGCACTAAGTTTGGGTACAGTTGCTAGATGCAAAACAAA
Esperia sulphurella genome assembly, chromosome: 20.
OX352277.1:952676-952695
TAGTTGTGAGAAGATTCGGCCTTGAAGGCT952676CAAGCCTTCAAGGCACTAAGCTTTCAAAACTAGAGCCTAAAAGGACTTCC
Esperia sulphurella genome assembly, chromosome: 25.
OX352282.1:9234373-9234392
AAGCTTTCAAGGCACTGATACTTCAAAGCT9234373CAAGCCTTCAAGGCACTAAGACATCAGAGTTCCAAACAGGCTTGGAGCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTAGTGCCTTGAAGGCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTAGTGCCTTGAAGGCTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.137 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=CTTAGTGCCTTGAAGGCTTG&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGCCTTCAAGGCACTAAG&k=0&no_gap=0&offset=0&limit=48
0.154 | 0.003 | cgi_end;

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