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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 15:19:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 6454 from patent US 10006042.
MI851181.1:2017-2038
TTGCAAAGACATTAAGTGTAGCACAGCTGG2017CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6456 from patent US 10006042.
MI851183.1:1308-1329
TTGCAAAGACATTAAGTGTAGCACAGCTGG1308CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6457 from patent US 10006042.
MI851184.1:1483-1504
TTGCAAAGACGTTAAGTGTGGCACAGCTGG1483CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Sequence 6454 from patent US 10337023.
MO174348.1:2017-2038
TTGCAAAGACATTAAGTGTAGCACAGCTGG2017CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6456 from patent US 10337023.
MO174350.1:1308-1329
TTGCAAAGACATTAAGTGTAGCACAGCTGG1308CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6457 from patent US 10337023.
MO174351.1:1483-1504
TTGCAAAGACGTTAAGTGTGGCACAGCTGG1483CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Sequence 6454 from patent US 10774340.
MV708095.1:2017-2038
TTGCAAAGACATTAAGTGTAGCACAGCTGG2017CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6456 from patent US 10774340.
MV708097.1:1308-1329
TTGCAAAGACATTAAGTGTAGCACAGCTGG1308CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6457 from patent US 10774340.
MV708098.1:1483-1504
TTGCAAAGACGTTAAGTGTGGCACAGCTGG1483CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Sequence 6454 from patent US 11499161.
OO875876.1:2017-2038
TTGCAAAGACATTAAGTGTAGCACAGCTGG2017CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6456 from patent US 11499161.
OO875878.1:1308-1329
TTGCAAAGACATTAAGTGTAGCACAGCTGG1308CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Sequence 6457 from patent US 11499161.
OO875879.1:1483-1504
TTGCAAAGACGTTAAGTGTGGCACAGCTGG1483CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
000510AEAA002897HT (AEAA) Aotea expanding leaf Malus domestica cDNA clone AEAA002897, mRNA sequence.
CN920204.1:3-24
GG3CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
000510AEAA002937HT (AEAA) Aotea expanding leaf Malus domestica cDNA clone AEAA002937, mRNA sequence.
CN920229.1:3-24
GG3CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
000511AEAA002726HT (AEAA) Aotea expanding leaf Malus domestica cDNA clone AEAA002726, mRNA sequence.
CN920522.1:3-24
GG3CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
000507AEAA002229HT (AEAA) Aotea expanding leaf Malus domestica cDNA clone AEAA002229, mRNA sequence.
CN920895.1:2-23
G2CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Mdfw2050d01.y1 Mdfw Malus domestica cDNA clone Mdfw2050d01 5' similar to TR:O80673 O80673 CPDK-RELATED PROTEIN, mRNA sequence.
CN995124.1:2-23
G2CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Mdwdr7511D22.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_181647.1| calcium-dependent protein kinase, putative (CDPK) [Arabidopsis thaliana] pir|T02105 calcium-dependent protein kinase
GO527773.1:151-172
TTGCAAAGACGTTAAGTGTGGCACAGCTGG151CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Pm_4395 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW872969.1:185-206
TTGCAAAGACATTAAGTGTAGCACAGCTGG185CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Prunus avium EST, clone WZ0APVCA14YM18FM1.
HE641162.1:552-573
TTGCAAAGACATTAAGTGTAGCACAGCTGG552CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
TSA: Pyrus x bretschneideri Unigene34781_XinShao mRNA sequence.
JR627356.1:189-210
TTGCAAAGACGTTAAGTCTAGCACAGCTGG189CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAACAAAAGTGGA
Prunus dulcis DNA, pseudomolecule Pd07.
AP019303.1:4269503-4269524
TTGCAAAGACATTAAGTGTAGCACAGCTGG4269503CTTATCTCCGGGACCAATTTACACTGTTAGGGCCAAATAAAAGTGGATTCAT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:18944692-18944713
TTGCAAAGACGTTAAGTGTGGCACAGCTGG18944692CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:19638242-19638263
TTGCAAAGACGTTAAGTGTGGCACAGCTGG19638242CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:18720626-18720647
TTGCAAAGACGTTAAGTGTGGCACAGCTGG18720626CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:19782069-19782090
TTGCAAAGACGTTAAGTGTGGCACAGCTGG19782069CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:13433759-13433780
TTGCAAAGACGTTAAGTGTGGCACAGCTGG13433759CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:12061060-12061081
TTGCAAAGACGTTAAGTGTGGCACAGCTGG12061060CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus domestica genome assembly, chromosome: 14.
OU696690.1:13277477-13277498
TTGCAAAGACGTTAAGTGTGGCACAGCTGG13277477CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:19217021-19217042
TTGCAAAGACGTTAAGTGTGGCACAGCTGG19217021CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:20518256-20518277
TTGCAAAGACATTAAGTGTAGCACAGCTAG20518256CTTATCTCCGGGACCAATTTACATTGTTAGGGCCAAATAAAAGTGGGTTCAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:10776725-10776746
ATGAACCCACTTTTATTTGGCCCTAACAAT10776725GTAAATTGGTCCCGGAGATAAGCCAGCTGTGCTACACTTAACGTCTTTGCAA
Malus domestica genome assembly, chromosome: 14.
OU744555.1:12375704-12375725
ATGAACCCACTTTTATTTGGCCCTAACAAT12375704GTAAATTGGTCCCGGAGATAAGCCAGCTGTGCCACACTTAACGTCTTTGCAA
Malus domestica genome assembly, chromosome: 14.
OU744966.1:12701626-12701647
ATGAACCCACTTTTATTTGGCCCTAACAAT12701626GTAAATTGGTCCCGGAGATAAGCCAGCTGTGCCACACTTAACGTCTTTGCAA
Malus domestica genome assembly, chromosome: 14.
OU745004.1:12563949-12563970
ATGAACCCACTTTTATTTGGCCCTAACAAT12563949GTAAATTGGTCCCGGAGATAAGCCAGCTGTGCCACACTTAACGTCTTTGCAA
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:8892758-8892779
ATGAACCCACTTTTATTTGGCCCTAACAAT8892758GTAAATTGGTCCCGGAGATAAGCCAGCTGTGCTACACTTAACGTCTTTGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTATCTCCGGGACCAATTTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTATCTCCGGGACCAATTTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.501 | 1.493 | search_plus_done; http://172.18.8.135:50400/match?q=CTTATCTCCGGGACCAATTTAC&k=0&no_gap=0&offset=0&limit=50
1.634 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=GTAAATTGGTCCCGGAGATAAG&k=0&no_gap=0&offset=0&limit=19
1.638 | 0.003 | cgi_end;

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