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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:45:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RGUS1306 Cherry differentially expressed Prunus avium x P. cerasus x P. canescens cDNA clone RGUS1306, mRNA sequence.
DV175422.1:93-112
GCATGGATCTCCAATGGCCTTCCCCATGAG93CTTCAATATACTTGGTGAGCAATGTGTCTTCTCTAGGAGTCCATGGACCT
Prunus dulcis DNA, pseudomolecule Pd02.
AP019298.1:17543289-17543308
GCATGGATCTCCAATGGCCTTCCCCATGAG17543289CTTCAATATACTTGGTGAGCAATGTGTCTTCTCTAGGAGTCCATGGACCT
Rosa rugosa genome assembly, chromosome: 6.
OY288196.1:40167743-40167762
GCAAGGATCTCCAATGGCCTTCACCATGAG40167743CTTCAATATACTTGGTGAGCAATGTGTCCTCTCTGGGAGTCCATGGACCT
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:31937942-31937961
GCAAGGATCTCCAATGGCCTTCACCATGAG31937942CTTCAATATACTTGGTGAGCAATGTGTCCTCTCTGGGAGTCCAAACACCT
EST 9081 Green Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bga011k06q 5', mRNA sequence.
CV047374.1:220-239
AGGTCCATGGACTCCTAGAGAAGACACATT220GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
SD1MrF3 YG/PR Prunus cerasus cDNA, mRNA sequence.
EE487874.1:199-218
AGGTCCATGGACTCCTAGAGAAGACACATT199GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Pm_1587 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW870161.1:304-323
AGGTCCATGGACTCCTAGAGAAGACACATT304GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Prunus mume strain hongmei clone P17 SSR marker genomic sequence.
GU458018.1:191-210
AGGTCCATGGACTCCTAGAGAAGACACATT191GCTCACCAAGTATATTGAAG
Prunus mume strain oushuku clone P18 SSR marker genomic sequence.
GU458019.1:193-212
AGGTCCATGGACTCCTAGAGAAGACACATT193GCTCACCAAGTATATTGAAG
Prunus avium R2R3-MYB transcription factor (MYBPA1) mRNA, complete cds.
GU938690.1:72-91
AGGTCCATGGACTCCTAGAGAAGACACATT72GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Rosa rugosa MYB5 mRNA, complete cds.
MH939144.1:122-141
AGGTCCATGGACTCCCAGAGAGGACACATT122GCTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGC
Rosa chinensis MYB5 transcription factor mRNA, complete cds.
PP130369.1:72-91
AGGTCCATGGACTCCCAGAGAGGACACATT72GCTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGC
Dioctria linearis genome assembly, chromosome: 1.
OZ005740.1:243051002-243051021
GATGCATATTAAACTAACCATACAGCGTGA243051002GCTCACCAAGTATATTGAAGCTATACCATAGGGAAATAAGGAACCAATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCAATATACTTGGTGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCAATATACTTGGTGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.165 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCAATATACTTGGTGAGC&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.225 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCACCAAGTATATTGAAG&k=0&no_gap=0&offset=0&limit=46
0.396 | 0.006 | cgi_end;

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