GGGenome | Results

2025-04-09 03:45:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Camellia sinensis mRNA, clone: RT30A04S, expressed in root, unspecified EST.
AB505868.1:15-35

CACTCACTCATTCA15CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

TL001G12 Young leaf cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA clone TL001G12 5', mRNA sequence.
CV013588.1:18-38

GGGGACTCACTCATTCA18CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTGTGTG

Camellia sinensis mRNA, clone: YL05A11, 5' end sequence, expressed in young leaves.
FS958867.1:5-25

TTCA5CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

EST0529 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_01_21.M13+_E03.ab1, mRNA sequence.
GE650202.1:35-55

GGCCATTACGGCCGGGGACTCACTCATTCA35CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

EST0996 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_07_65.M13+_A09.ab1, mRNA sequence.
GE650669.1:35-55

GGCCATTACGGCCGGGGACTCACTCATTCA35CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

EST1113 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_25.M13+_A04.ab1, mRNA sequence.
GE650786.1:35-55

GGCCATTACGGCCGGGGACTCACTCATTCA35CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGGCATTTGTTGTTG

EST1128 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_41.M13+_A06.ab1, mRNA sequence.
GE650801.1:35-55

GGCCATTACGGCCGGGGACTCACTCATTCA35CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

EST3409 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone OUYI_CG_62.M13+_F08, mRNA sequence.
GE653082.1:27-47

TATCGGCCATTACGGCCGGGGATTCA27CTTCAATCACTAACCATTCTAGAGAGAGAGAGATGGAAGGGAAAGAAGAAG

Tea250_2006-04-14_1/Tea250_E12_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK478028.1:14-34

GGGGACTCATTCA14CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

Camellia oleifera clone 6186-1 aquaporin mRNA, complete cds.
EU850810.1:15-35

GACTCACTCTTTCA15CTTCAATCACTAACCATTCTAGAGAGAGAAAAAGTGTGACATTTGTTGTTC

Camellia oleifera clone 6186-2 aquaporin mRNA, complete cds.
EU850811.1:7-27

GACTCA7CTTCAATCACTAACCATTCTAGAGAGAGAAAAAGTGTGACATTTGTTGTTC

Camellia sinensis aquaporin protein 3 mRNA, complete cds.
KC008718.1:18-38

ACATGGGGACTCATTCA18CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

Camellia sinensis aquaporin protein AQU17 mRNA, complete cds.
KC215410.1:18-38

ACATGGGGACTCATTCA18CTTCAATCACTAACCATTCTAGAGGGAGAAAAAGTGTGACATTTGTTGTTG

3_Tms_b3v08.
OB796881.1:399-419

AAAATAACATCACAGAACTACAACTGTGAT399TAGAATGGTTAGTGATTGAAGAAACAAACTGATGAGAAACTGATTGTTACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.657 | 0.648 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCAATCACTAACCATTCTA&k=0&no_gap=0&offset=0&limit=50
0.704 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAATGGTTAGTGATTGAAG&k=0&no_gap=0&offset=0&limit=37
0.704 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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