GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 08:02:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Sequence 118480 from Patent WO2008034648.
FB899207.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 123030 from Patent WO2008034648.
FB903757.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 124268 from Patent WO2008034648.
FB904995.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 131419 from Patent WO2008034648.
FB912146.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 133629 from Patent WO2008034648.
FB914356.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 143495 from Patent WO2008034648.
FB924222.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 118480 from Patent EP2090662.
HB769266.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 123030 from Patent EP2090662.
HB773816.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 124268 from Patent EP2090662.
HB775054.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 131419 from Patent EP2090662.
HB782205.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 133629 from Patent EP2090662.
HB784415.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Sequence 143495 from Patent EP2090662.
HB794281.1:506-525
TAAACATGATGAAGGAAGAGAGCCTCTTTG506CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Brassica oleracea var. viridis mRNA, clone: KALE-090H17, 5' end sequence.
DK490150.1:545-564
TAAACATGATGAAGGAAGAGAGCCTCTTTG545CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Brassica oleracea var. viridis mRNA, clone: KALE-144O15, 5' end sequence.
DK510959.1:545-564
TAAACATGATGAAGGAAGAGAGCCTCTTTG545CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
0077833 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153972.1:538-557
TAAACATGATGAAGGAAGAGAGCCTCTTTG538CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
0077897 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154036.1:539-558
TAAACATGATGAAGGAAGAGAGCCTCTTTG539CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
0081293 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157431.1:545-564
TAAACATGATGAAGGAAGAGAGCCTCTTTG545CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
0084939 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV161077.1:537-556
TAAACATGATGAAGGAAGAGAGCCTCTTTG537CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
BR023625 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-058G07 5', mRNA sequence.
EX038981.1:55-74
TAAACATGATGAAGGAAGAGAGCCTCTTTG55CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
BR030263 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-147F07 5', mRNA sequence.
EX045619.1:507-526
TAAACATGATGAAGGAAGAGAGCCTCTTTG507CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
TSA: Betula platyphylla Unigene29460_ya_RNA mRNA sequence.
JP697247.1:63-82
TGAACCTGATGAAGTCAGAGGGTTTATATG63CTTCACAAGGAGGTCCAATCATACTCTCACAGATTGAGAATGAATACCAA
TSA: Betula platyphylla Unigene33879_All.Beplwood mRNA sequence.
KA273800.1:546-565
TGAACCTGATGAAGTCAGAGGGTTTATATG546CTTCACAAGGAGGTCCAATCATACTCTCACAGATTGAGAATGAATACCAA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:6298561-6298580
TAAACATGATGAAGGAAGAGAGCCTCTTTG6298561CTTCACAAGGAGGTCCAATCATCCTAGCTCAGGTACATTATTACAAATGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:11246643-11246662
TAAACATGATGAAGGAAGAGAGCCTCTTTG11246643CTTCACAAGGAGGTCCAATCATCCTAGCTCAGGTACATTATTACAAATGT
Corylus americana cultivar Rush chromosome 11.
CP125824.1:11168112-11168131
TCAACTTGATGAAGTCAGAGGGTTTATATG11168112CTTCACAAGGAGGTCCAATCATACTCTCACAGGTGCTACCTTCTCAACCT
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:10750213-10750232
TCAACTTGATGAAGTCAGAGGGTTTATATG10750213CTTCACAAGGAGGTCCAATCATACTCTCACAGGTACTACCTTCTCAATCT
Microcos paniculata chromosome 8b.
CP131454.1:28837671-28837690
TTAACCTCATGAAGAAAGAGAAACTTTTTG28837671CTTCACAAGGAGGTCCAATCATCCTGGCTCAGGCAAGTATAAAATGAAAT
Microcos paniculata chromosome 8a.
CP131463.1:28110650-28110669
TTAACCTCATGAAGAAAGAGAAACTTTTTG28110650CTTCACAAGGAGGTCCAATCATCCTGGCTCAGGCAAGTATAAAATGAAAT
Khaya senegalensis isolate HCNGB_00002341 chromosome 14.
CP135536.1:6150502-6150521
TGAAAATGATGAAGAAGGAGAAGCTTTTTG6150502CTTCACAAGGAGGTCCAATCATCTTGTCTCAGGCAAGTTACAGCTTTCAA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 9.
CP135586.1:5843677-5843696
TAAAAATGATGAAGAAGGAGAAGCTTTTTG5843677CTTCACAAGGAGGTCCAATCATCTTGTCTCAGGCAAGTTACAGCTTTTAA
Fragaria x ananassa cultivar Benihoppe chromosome 19.
CP139757.1:16405884-16405903
TGAACTAGATGAAATCAGAGGGTTTATACG16405884CTTCACAAGGAGGTCCAATCATACTCTTGCGGGTACCTAATCTTATATGA
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:12193577-12193596
TCAACTTGATGAAGTCAGAGGGTTTATATG12193577CTTCACAAGGAGGTCCAATCATACTCTCACAGGTACTACCTTCTCAATCT
Mercurialis annua genome assembly, chromosome: LG1-X.
OW569319.1:68211800-68211819
TAACAATGATGCAATCAGAGAGCTTATATG68211800CTTCACAAGGAGGTCCAATCATACTATCACAGGTTCCGATTTGGACTTAA
Ilex aquifolium genome assembly, chromosome: 12.
OX637402.1:23829614-23829633
TCAACATGATGAAGGCAGAGGGACTATATG23829614CTTCACAAGGAGGTCCAATCATACTTTCACAGGTTGAAACAGTAATAAGT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:100678-100697
TTGGGATATTGAAAAAAGAGAAGCTATTCG100678CTTCACAAGGAGGTCCAATCATCTTAGGACAGGTATATGTAGTGAGCAAA
Primula veris genome assembly, chromosome: 4.
OY821743.1:10907847-10907866
TGAATCTGATGAAGTCCGAAAGTCTGTATG10907847CTTCACAAGGAGGTCCAATCATATTGTCACAGGTTCTTTTATGATGCATA
Primula vulgaris genome assembly, chromosome: 5.
OY987216.1:10671685-10671704
TGAATCTGATGAAGTCCGAAAGTCTGTATG10671685CTTCACAAGGAGGTCCAATCATATTGTCACAGGTTCTTTTATGATGCATA
B.oleracea mRNA for beta-D-galactosidase.
X84684.1:531-550
TAAACATGATGAAGGAAGAGAGCCTCTTTG531CTTCACAAGGAGGTCCAATCATCCTAGCTCAGATCGAGAATGAGTATGGG
Aplysina aerophoba genome assembly, chromosome: 16.
OX465048.1:33845-33864
CTATTGCTTACAAAGTTGGCCAGGAAAATC33845CTTCACAAGGAGGTCCAATCTTCCATGGGGTCCTCCTGCCTAGGATGATC
TSA: Physalis peruviana Php00s.F7LC7MZ03G6UNQ mRNA sequence.
JO151831.1:199-218
TTCATATTCATTCTCAATCTGCGAGAGTAT199GATTGGACCTCCTTGTGAAGCATATAGTCCTTCTGATTTCATTAGGTTCT
TSA: Fagopyrum esculentum Unigene51023_laojing mRNA sequence.
JW708397.1:886-905
TCCGAACTCATTCTCAATTTGAGAGAGAAT886GATTGGACCTCCTTGTGAAGCAAATAATCTTTCATTCTTCATCATCTGAA
TSA: Betula platyphylla Unigene79367_All.Beplwood mRNA sequence.
KA238379.1:79-98
TTGGTATTCATTCTCAATCTGTGAGAGTAT79GATTGGACCTCCTTGTGAAGCATATAAACCCTCTGTCTTCATCAGGTTCA
TSA: Betula platyphylla Unigene33878_All.Beplwood mRNA sequence.
KA273799.1:1753-1772
TTGGTATTCATTCTCAATCTGTGAGAGTAT1753GATTGGACCTCCTTGTGAAGCATATAAACCCTCTGTCTTCATCAGGTTCA
MG_Ba0049C12.R MG_Ba Erythranthe guttata genomic 3', genomic survey sequence.
GS400118.1:189-208
AAATAATTGAATACAAACCTGTGCAATGAT189GATTGGACCTCCTTGTGAAGCAAATAGATTCTCTTGCTTCACCATATCCA
Carpinus viminea chromosome 1.
CP054667.1:30109674-30109693
AGGTTCAGAAAGTAGTACCTGTGAGAGTAT30109674GATTGGACCTCCTTGTGAAGCATATAAACCCTCTGACTTCATCAAGTTCA
Khaya senegalensis isolate HCNGB_00002341 chromosome 10.
CP135532.1:2356964-2356983
TAGAAAGCTATAACTTGCCTGAGCCAAGAT2356964GATTGGACCTCCTTGTGAAGCAAAAAGCTTCTCCTTCTTCATCATTTTCA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 10.
CP135560.1:2281616-2281635
TAGACAGCTATAACTTGCCTGAGCCAAGAT2281616GATTGGACCTCCTTGTGAAGCAAAAAGCTTCTCCTTCTTCATCATTTTCA
Fragaria x ananassa cultivar Benihoppe chromosome 3.
CP139773.1:16597568-16597587
ATATATAAGATTAGGTACCTGCGAGAGTAT16597568GATTGGACCTCCTTGTGAAGCGTATAAACCCTCTGATTTCATCAAGTTCA
Fragaria x ananassa cultivar Benihoppe chromosome 1.
CP139775.1:16178129-16178148
TCATATAAGATTAGGTACCTGCGACAGTAT16178129GATTGGACCTCCTTGTGAAGCGTATAAACCCTCTGATTTCATCAAGTTCA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:14475704-14475723
ACATTTGTAATAATGTACCTGAGCTAGGAT14475704GATTGGACCTCCTTGTGAAGCAAAGAGGCTCTCTTCCTTCATCATGTTTA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:54160199-54160218
ACATTTGTAATAATGTACCTGAGCTAGGAT54160199GATTGGACCTCCTTGTGAAGCAAAGAGGCTCTCTTCCTTCATCATGTTTA
Brassica rapa genome, scaffold: A10.
LR031577.1:11443604-11443623
ACATTTGTAATAATGTACCTGAGCTAGGAT11443604GATTGGACCTCCTTGTGAAGCAAAGAGGCTCTCTTCCTTCATCATGTTTA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:52308848-52308867
ACATTTGTAATAATGTACCTGAGCTAGGAT52308848GATTGGACCTCCTTGTGAAGCAAAGAGGCTCTCTTCCTTCATCATGTTTA
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:53549823-53549842
TTTGCTCACTACATATACCTGTCCTAAGAT53549823GATTGGACCTCCTTGTGAAGCGAATAGCTTCTCTTTTTTCAATATCCCAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:14199735-14199754
ACATTTGTAATAATGTACCTGAGCTAGGAT14199735GATTGGACCTCCTTGTGAAGCAAAGAGGCTCTCTTCCTTCATCATGTTTA
Chrysanthemum makinoi genome assembly, chromosome: 4.
OU343220.1:233489688-233489707
TATAATAAACTTGCAAACCTGTGATAAAAT233489688GATTGGACCTCCTTGTGAAGCAAAGAGCTTCTCTGCCTTCATCATGTTCA
Comarum palustre genome assembly, chromosome: 17.
OX637588.1:16748936-16748955
TCATATAAGATTAGGTACCTGCGAGAGTAT16748936GATTGGACCTCCTTGTGAAGCGTATAAACCCTCTGATTTCATCAATTTCA
Parietaria judaica genome assembly, chromosome: 1.
OX940860.1:25456188-25456207
TCTATACTATAACTATACCTGTGACAGTAT25456188GATTGGACCTCCTTGTGAAGCGTACAACCCTTCTGATTTCATCATGTCTA
Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:31238653-31238672
CCAAGATTAATTAGGTACCTGCGAGAGTAT31238653GATTGGACCTCCTTGTGAAGCGTATAATTCCTCTGATTTCATCAAGTTCA
Alnus glutinosa genome assembly, chromosome: 14.
OY340911.1:12802302-12802321
TCAGAAGGTACGTAGTACCTGAGACAGTAT12802302GATTGGACCTCCTTGTGAAGCATATAAACCCTCTGACTTGATCAATTTCA
Pseudognaphalium luteoalbum genome assembly, chromosome: 6.
OY730197.1:93675339-93675358
AAATATAAACTTTCAAACCTGAGATAGAAT93675339GATTGGACCTCCTTGTGAAGCAAACAATTTCTCTTCCTTCATCATGCTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCACAAGGAGGTCCAATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCACAAGGAGGTCCAATC | format : html | download : | debug :

0.009 | 0.009 | search_start;
1.129 | 1.120 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCACAAGGAGGTCCAATC&k=0&no_gap=0&offset=0&limit=50
1.345 | 0.217 | search_minus_done; http://172.18.8.135:50400/match?q=GATTGGACCTCCTTGTGAAG&k=0&no_gap=0&offset=0&limit=11
1.360 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).