GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

sai04e12.y1 Gm-c1050 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1050-4464 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BI468885.1:32-51
TAAACCAAAATTATCCAAAACCATGTCCAG32CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
sai14h05.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3418 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BI498496.1:32-51
TAAACCAAAATTATCCAAAACCATGTCCAG32CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
saq57e06.y1 Gm-c1076 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1076-4043 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BQ742905.1:53-72
TAAACCAAAATTATCCAAAACCATGTCCAG53CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
Glycine max cDNA clone: GMFL01-45-D15, 5'end.
BW679549.1:55-74
TAAACCAAAATTATCCAAAACCATGTCCAG55CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
Glycine max cDNA, clone: GMFL02-44-A01, 5'end.
DB970780.1:20-39
GATCCAAAACCATGTCCAG20CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
Glycine max cDNA, clone: GMFL02-47-N17, 5'end.
DB972147.1:20-39
GATCCAAAACCATGTCCAG20CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
TSA: Pisum sativum Ps_contig_mira-ass_4312 mRNA sequence.
JI901141.1:41-60
CCACACACACAAAAAAAGAACCATGTCTAG41CTTCACTCATGCCACCACACTACTCCATGCTCACATCAAAACCAAACACA
TSA: Pisum sativum Ps_contig_mira-ass_73425 mRNA sequence.
JI959536.1:56-75
CCACACACACAAAAAAAGAACCATGTCTAG56CTTCACTCATGCCACCACACTACTCCATGCTCACATCAAAACCAAACACA
TSA: Pisum sativum contig11139.PisaPYK9 mRNA sequence.
JR961768.1:30-49
ACACACACAAAAAAGAAAACCATGTCTAG30CTTCACTCATGCCACCACACTACTCCATGCTCACATCAAAACAAACACAA
Glycine max cDNA, clone: GMFL01-45-D15.
AK287145.1:55-74
TAAACCAAAATTATCCAAAACCATGTCCAG55CTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACA
Lathyrus sativus genome assembly, chromosome: 2.
OZ012736.1:7497649-7497668
AATACACCACACAAAAAAAACCATGTCTAG7497649CTTCACTCATGCCACCACACTACTCCATGCTCACATCAAAACCAAACACA
Thysanoteuthis rhombus genome assembly, chromosome: 11.
OY735208.1:56556142-56556161
TGTCTATTTCTCTCTCTCTCGAAAAACCCA56556142CTTCACTCATGCCACCACACCTCACCCACACCTCTTCCACCGTCACACGT
Acipenser ruthenus genome assembly, chromosome: 2.
OV754671.1:110993266-110993285
CATACCTGTCACACAGGAAGTCAGTCTACA110993266GTGTGGTGGCATGAGTGAAGTTTATTACTACCATGCCCTGTTATCACAGA
TSA: Pisum sativum Ps_contig_mira-ass_13574 mRNA sequence.
JI910264.1:179-198
TGTGTTTGGTTTTGATGTGAGCATGGAGTA179GTGTGGTGGCATGAGTGAAGCTAGACATGGTTCTTTTTTTGTGTGYSCCS
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-09.
CP023121.1:18442099-18442118
TGTGCTTGGTTTTGATGTGAGCATGGAGTA18442099GTGTGGTGGCATGAGTGAAGCTGGACATGGTTTTGGATAATTGGCATAGA
Glycine max cultivar Williams 82 chromosome 1.
CP126426.1:6043502-6043521
TGTGCTTGGTTTTGATGTGGGCATGGAGGA6043502GTGTGGTGGCATGAGTGAAGCTGGACATGGTTTTGGATAATTTTGGTTTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828095.1:650440040-650440059
AGGTGTGATTGTGTGATCTTGTGATTTCAT650440040GTGTGGTGGCATGAGTGAAGTAGTGGGGTGATTTAGTGGAGTGTGGTGTT
Hordeum vulgare genome assembly, chromosome: 2H.
OX460188.1:654314084-654314103
AGGTGTGATTGTGTGATCTTGTGATTTCAT654314084GTGTGGTGGCATGAGTGAAGTAGTGGGGTGATTTAGTGGAGTGTGGTGTT
Hordeum vulgare genome assembly, chromosome: 2H.
OX460195.1:655891751-655891770
AGGTGTGATTGTGTGATCTTGTGATTTCAT655891751GTGTGGTGGCATGAGTGAAGTAGTGGGGTGATTTAGTGGAGTGTGGTGTT
Hordeum vulgare genome assembly, chromosome: 2H.
OX460230.1:654613301-654613320
AGGTGTGATTGTGTGATCTTGTGATTTCAT654613301GTGTGGTGGCATGAGTGAAGTAGTGGGGTGATTTAGTGGAGTGTGGTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCACTCATGCCACCACAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCACTCATGCCACCACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.234 | 0.225 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCACTCATGCCACCACAC&k=0&no_gap=0&offset=0&limit=50
0.269 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTGGTGGCATGAGTGAAG&k=0&no_gap=0&offset=0&limit=38
0.274 | 0.005 | cgi_end;

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