GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 17:56:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Melanostigma gelatinosum genome assembly, chromosome: 2.
OX456499.1:25593044-25593063
CTTTGAGACAAAACACTCGAGTTCAGGTAG25593044CTTCACTCTGCACACCCAAATCCTTCCCCCCCCCCCCCCCCTACCATACC
Dianthus caryophyllus mRNA, clone: CES07G02, 5' end sequence.
FY384886.1:88-107
TGGCTGCCACCGCAATGGCCGCCGTAGGAC88CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES08A22, 5' end sequence.
FY385145.1:138-157
TGGCTGCCACCGCAATGGCCGCCGTAGGAC138CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES11_O15, 5' end sequence.
FY386606.1:44-63
TGGCTGCCACCGCAATGGCCGCCGTAGGAC44CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES14O01, 5' end sequence.
FY387726.1:96-115
TGGCTGCCACCGCAATGGCCGCCGTAGGAC96CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES19P14, 5' end sequence.
FY389649.1:116-135
TGGCTGCCACCGCAATGGCCGCCGTAGGAC116CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES25_D22, 5' end sequence.
FY391629.1:84-103
TGGCTGCCACCGCAATGGCCGCCGTAGGAC84CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Dianthus caryophyllus mRNA, clone: CES30I19, 5' end sequence.
FY393619.1:143-162
TGGCTGCCACCGCAATGGCCGCCGTAGGAC143CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.610.C1.
FX297765.1:142-161
TGGCTGCCACCGCAATGGCCGCCGTAGGAC142CTTCACTCTGCACACCCAAAACCACCGTCACACCCAAGCACTTAAAACCC
Meles meles genome assembly, chromosome: 17.
OV277458.1:2990229-2990248
GTTCTGCTGTGTACCTTGATCGCGGTTAGG2990229TTTGGGTGTGCAGAGTGAAGGTAGGAAGAAACCACATGCTCCAGGTGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCACTCTGCACACCCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCACTCTGCACACCCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.005 | 0.996 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCACTCTGCACACCCAAA&k=0&no_gap=0&offset=0&limit=50
1.136 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGGGTGTGCAGAGTGAAG&k=0&no_gap=0&offset=0&limit=41
1.137 | 0.001 | cgi_end;

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