GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 07:53:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Bombus terrestris a60465.bterqova mRNA sequence.
JL818200.1:1834-1853
AAACCTGTTATAAAAACATTTGGTTATTTG1834CTTCAGCACACAGAAACTGACTGTATACATACAAATCTTTGTACAGTAAA
Plecturocebus moloch clone LB5-8L6, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC151890.2:70383-70402
CAAAATGGCCCAGGCTGTCTCGTTCAACCT70383CTTCAGCACACAGAAACTGAAAGTGAGGCTCAGAAAAGCTGGCGGCCTTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OU015703.1:569076276-569076295
AAAATTGGGTAAAAGCCCCTACAAAAGAGA569076276CTTCAGCACACAGAAACTGACACTGGGTGCACTGAGTTAGTAGGTTAGTC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX459993.1:545471352-545471371
AAAATTGGGTAAAAGCCCCTACAAAAGAGA545471352CTTCAGCACACAGAAACTGACACTGGGTGCACTGAGTTAGTAGGTTAGTC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX460007.1:555496744-555496763
AAAATTGGGTAAAAGCCCCTACAAAAGAGA555496744CTTCAGCACACAGAAACTGACACTGGGTGCACTGAGTTAGTAGGTTAGTC
Bombus terrestris genome assembly, chromosome: 14.
OU342934.1:7386530-7386549
AAACCTGTTATAAAAACATTTGGTTATTTG7386530CTTCAGCACACAGAAACTGACTGTATACATACAAATCTTTGTACAGTAAA
Macaca fascicularis complete genome, chromosome chr1.
LT160000.1:175667901-175667920
CTATGGCATTGGCCCCATGATTGTGTGATC175667901TCAGTTTCTGTGTGCTGAAGTCAGAACCCCATCTCAATGAGGTGATCATA
47RDOAH_UP_036_G05_17AUG2004_035 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029016.1:497-516
GATTCTGGTAAGAGGTCCTCTGCGTCAAGA497TCAGTTTCTGTGTGCTGAAGTTTAACAAGAAAAAAAAAAAAGACAGAAAA
BNAOV1GH_T3_094_B06_20SEPT2007_046 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR449957.1:628-647
GATTCTGATTAGAGGTCCTCTGCGTCAAGA628TCAGTTTCTGTGTGCTGAAGTTTAACAAGAAAATTAAAAAAAAGACAAAA
TSA: Bombus terrestris a101545.btermhead mRNA sequence.
JL675922.1:1372-1391
TTTACTGTACAAAGATTTGTATGTATACAG1372TCAGTTTCTGTGTGCTGAAGCAAATAACCAAATGTTTTTATAACAGGTTT
TSA: Bombus terrestris a34784.bterqhead mRNA sequence.
JL730605.1:1653-1672
TTTACTGTACAAAGATTTGTATGTATACAG1653TCAGTTTCTGTGTGCTGAAGCAAATAACCAAATGTTTTTATAACAGGTTT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:68633729-68633748
GATTCTGATTAGAGGTCCTCTGCGTCAAGA68633729TCAGTTTCTGTGTGCTGAAGTTTAACAAGAAAATTAAAAAAAAGACAAAA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:62661966-62661985
GATTCTGATTAGAGGTCCTCTGCGTCAAGA62661966TCAGTTTCTGTGTGCTGAAGTTTAACAAGAAAATTAAAAAAAAGACAAAA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:62294697-62294716
GATTCTGGTAAGAGGTCCTCTGCGTCAAGA62294697TCAGTTTCTGTGTGCTGAAGTTTAACAAGAAAAAAAAAAAAGACAGAAAA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737379.1:309149147-309149166
TCATTTTTCACATATTTAGTGCACCCAGTG309149147TCAGTTTCTGTGTGCTGAAGTGTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737386.1:319932703-319932722
TCATTTTTCACATATTTAGTGCACCCAGTG319932703TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737387.1:455176137-455176156
GACTAACCTACTAACTCAGTGCACCCAAAG455176137TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGACTTTTACCCCAATTT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737411.1:295888696-295888715
TCATTTTTCACATATTTAGTGCACCCAGTG295888696TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737412.1:369606517-369606536
GACTAACCTACTAACTTAGTACACCAAGTG369606517TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCAGAAGCT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737418.1:293808008-293808027
TCATTTTTCACATATTTAGTGCACCCAGTG293808008TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737429.1:313645348-313645367
TCATTTTTCACATATTTAGTGCACCCAGTG313645348TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737430.1:385394600-385394619
GACTAACCTGCTAACTTAGTACACCCAGTG385394600TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCAGAAGCT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737520.1:288192767-288192786
TCATTTTTCACATATTTAGTGCACCCAGTG288192767TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737527.1:285308298-285308317
TCATTTTTCACATATTTAGTGCACCCAGTG285308298TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737528.1:358229178-358229197
GACTAACCTACTAACTTAGTACACCCAGTG358229178TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCGGAAGCT
Hordeum bulbosum genome assembly, chromosome: 5H_2.
OY737529.1:411971190-411971209
GACGAACCTACTAACTTAGTGCACCTAGTG411971190TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737534.1:312053582-312053601
TCATTTTTCACATATTTAGTGCACCCAGTG312053582TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737535.1:370580314-370580333
GACTAACCTACTAACTTAGTACACCCAGTG370580314TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCGGAAGCT
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737541.1:310395235-310395254
TCATTTTTCACATATTTAGTGCACCCAGTG310395235TCAGTTTCTGTGTGCTGAAGTGTTTTTTGTAGGGGCTTTTACCCAATTTT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737542.1:358943400-358943419
GACTAACCTACTAACTTAGTACACCCAGTG358943400TCAGTTTCTGTGTGCTGAAGTCTTTTTTGCAGGGGCTTTTACCGGAAGCT
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737627.1:304874966-304874985
TCATTTTTCACATATTTAGTGCACCCAGTG304874966TCAGTTTCTGTGTGCTGAAGTCTTTTTTGTAGGGGCTTTTACCCAATTTT
Protula sp. h YS-2021 genome assembly, chromosome: 6.
OX457029.1:70873299-70873318
CTCGTGCTGGTCTGACCTCTTGACATTTGC70873299TCAGTTTCTGTGTGCTGAAGATGTGTGCACTGTGCGAGGTGTGCAGTGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCAGCACACAGAAACTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCAGCACACAGAAACTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.319 | 0.310 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCAGCACACAGAAACTGA&k=0&no_gap=0&offset=0&limit=50
0.591 | 0.272 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGTTTCTGTGTGCTGAAG&k=0&no_gap=0&offset=0&limit=44
0.608 | 0.017 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).