GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 18:20:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

sc21a09.y1 Gm-c1013 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1013-1265 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
AI901129.1:68-87
TGTTCCAACCATCCATGATTGGAATGGAAG68CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
se02g06.y1 Gm-c1013 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1013-2387 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97. [1], mRNA sequence.
AW132335.1:300-319
TGTTCCAACCATCCATGATTGGAATGGAAG300CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sl64f08.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-6112 5' similar to SW:ACT3_SOLTU P30167 ACTIN 58. [1], mRNA sequence.
AW761214.1:408-427
TGTTCCGACCATTCATGATTGGAATGGAAG408CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
st27c09.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-137 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BF066640.1:244-263
TGTTCCAACCATCCATGATTGGAATGGAAG244CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
saa02b03.y1 Gm-c1058 Glycine soja cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1058-54 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BG045513.1:73-92
TGTTCCAACCATCCATGATTGGAATGGAAG73CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
saf68f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-1439 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BI317246.1:125-144
TGTTCCAACCATCCATGATTGGAATGGAAG125CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sai97h07.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9181 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BI974205.1:338-357
TGTTCCAACCATCCATGATTGGAATGGAAG338CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
saj22a03.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-3461 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BM094823.1:153-172
TGTTCCAACCATCCATGATTGGAATGGAAG153CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sal03a06.y1 Gm-c1057 Glycine soja cDNA clone SOYBEAN CLONE ID: Gm-c1057-3876 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BM568340.1:455-474
TGTTCCAACCATCCATGATTGGAATGGAAG455CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sao83c12.y1 Gm-c1081 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1081-2423 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BQ453533.1:48-67
TGTTCCAACCATCCATGATTGGAATGGAAG48CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sap65d01.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-5522 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BQ611793.1:274-293
TGTTCCAACCATCCATGATTGGAATGGAAG274CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
sat27c02.y1 Gm-c1056 Glycine soja cDNA clone SOYBEAN CLONE ID: Gm-c1056-2428 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
CA785081.1:275-294
TGTTCCAACCATCCATGATTGGAATGGAAG275CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
gmrhRww24-05-T7_D02_1_010 Soybean root hair subtracted cDNA library gmrhRww24 Glycine max cDNA, mRNA sequence.
CF921952.1:369-388
TGTTCCAACCATCCATGATTGGAATGGAAG369CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
Glycine max cDNA, clone: GMFL02-07-F02, 5'end.
DB957723.1:536-555
TGTTCCAACCATCCATGATTGGAATGGAAG536CTTCAGGCATTCACGAGACAACATACAACTCCCTAATGAAGTGCGATGTT
Glycine max cDNA, clone: GMFL02-15-D09, 5'end.
DB960529.1:536-555
TGTTCCAACCATCCATGATTGGAATGGAAG536CTTCAGGCATTCACGAGACAACATACAACTCCGTAATGAAGTGCGATGTT
GLPA335TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FG998102.1:370-389
TGTTCCAACCATCCATGATTGGAATGGAGG370CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
GS_Ba165J17.F GS_Ba Glycine syndetika genomic 5', genomic survey sequence.
HN881226.1:202-221
TGTTCCAACCATCCATGATTGGAATGGAAG202CTTCAGGCATTCACGAGACAACATACAATTCCATAATGAAGTGTGATGTT
Glycine max cDNA, clone: GMFL01-17-C16.
AK285830.1:917-936
TGTTCCAACCATCCATGATTGGAATGGAAG917CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
Soybean clone JCVI-FLGm-25L8 unknown mRNA.
BT096909.1:918-937
TGTTCCAACCATCCATGATTGGAATGGAAG918CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
Glycine max cultivar Williams 82 chromosome 18.
CP126443.1:59706418-59706437
TGTTCCAACCATCCATGATTGGAATGGAAG59706418CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
Glycine max actin (Soy118) gene, partial cds.
U60503.1:1216-1235
TGTTCCAACCATCCATGATTGGAATGGAAG1216CTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTT
Taurulus bubalis genome assembly, chromosome: 3.
OU342713.1:24051358-24051377
TATTTATATTTAACCAGTACACTCAACTTC24051358TGTCTCGTGAATGCCTGAAGATACTCTGTCTTCTGGATTTTAGGTTGCAT
GM830005B12E09 Gm-r1083 Glycine max cDNA clone Gm-r1083-1769 3', mRNA sequence.
BI968542.1:546-565
AACATCGCACTTCATTATGGAGTTGTATGT546TGTCTCGTGAATGCCTGAAGCTTCCATTCCAATCATGGATGGTTGGAACA
Glycine max cDNA clone: GMFL01-16-J08, 3'end.
BW659667.1:558-577
AACATCGCACTTCATTATGGAGTTGTATGT558TGTCTCGTGAATGCCTGAAGCTTCCATTCCAATCATGGATGGTTGGAACA
Glycine max cDNA clone: GMFL01-17-C16, 3'end, similar to actin (ACT3).
BW660236.1:614-633
AACATCGCACTTCATTATGGAGTTGTATGT614TGTCTCGTGAATGCCTGAAGCTTCCATTCCAATCATGGATGGT
Glycine max cDNA clone: GMFL01-33-D13, 3'end, similar to actin (ACT3).
BW671411.1:615-634
AACATCGCACTTCATTATGGAGTTGTATGT615TGTCTCGTGAATGCCTGAAGCTTCCATTCCAATCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCAGGCATTCACGAGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCAGGCATTCACGAGACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.409 | 0.400 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCAGGCATTCACGAGACA&k=0&no_gap=0&offset=0&limit=50
0.508 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCTCGTGAATGCCTGAAG&k=0&no_gap=0&offset=0&limit=29
0.511 | 0.003 | cgi_end;

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