GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 08:42:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Sequence 17980 from patent US 7750207.
GX323905.1:576-595
TGTTACGGTTTGATTCATCAGATTTCAATT576CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCACA
128c11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961868.1:499-518
TGTTACGGTTTGATTCGTCAGATTTCAATT499CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGC
131f07 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN962136.1:496-515
TGTTACGGTTTGATTCGTCAGATTTCAATT496CTTCCAACACCTTCTCCAAGGGTTGAGGGATCTGCG
141d09 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN962666.1:499-518
TGTTACGGTTTGATTCGTCAGATTTCAATT499CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCG
142e09 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN962771.1:494-513
TGTTACGGTTTGATTCGTCAGATTTCAATT494CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCG
143a02 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN962812.1:494-513
TGTTACGGTTTGATTCGTCAGATTTCAATT494CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCG
148A11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963143.1:497-516
TGTTACGGTTTGATTCGTCAGATTTCAATT497CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCACA
0167588 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV133220.1:523-542
TGTTACGGTTTGATTCGTCAGATTTCAATT523CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCGGA
RS3AB67JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737304.1:478-497
TGTTACGGTTTGATTCGTCAGATTTCAATT478CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RS3AP07JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737471.1:502-521
TGTTACGGTTTGATTCGTCAGATTTCAATT502CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RR2BY52JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX759384.1:563-582
TGTTACGGTTTGATTCGTCAAATTTCAATT563CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAACTTCTTGAGA
RS1CT15JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893960.1:515-534
TGTTACGGTTTGATTCGTCAGATTTCAATT515CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RS3C986JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX908439.1:523-542
TGTTACGGTTTGATTCGTCAGATTTCAATT523CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RS1DT87JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY927919.1:518-537
TGTTACGGTTTGATTCGTCAGATTTCAATT518CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RS2EA76JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936481.1:586-605
TGTTACGGTTTGATTCGTCAGATTTCAATT586CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
RS3DK42JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY943733.1:526-545
TGTTACGGTTTGATTCGTCAGATTTCAATT526CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGTTTCTTGAGA
RR1F259JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD530057.1:517-536
TGTTACGGTTTGATTCGTCAGATTTCAATT517CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
0256585 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO921121.1:593-612
TGTTACGGTTTGATTCGTCAGATTTCAATT593CTTCCAACACCTTCTCCAAGGTTGACGGATCTGCGTCCAACTTCTTCCGG
0274210 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO938089.1:548-567
TGTTACGGTTTGATTCGTCAGATTTCAATT548CTTCCAACACCTTCTCCAAGGTTGACGGATCTGCGTCCAACTTCTTCAGA
0242463 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO942714.1:538-557
TGTTACGGTTTGATTCGTCAGATTTCAATT538CTTCCAACACCTTCTCCAAGGTTGACGGATCTGCGTCCAACTTCTTCAGA
0247816 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO956614.1:539-558
TGTTACGGTTTGATTCGTCAGATTTCAATT539CTTCCAACACCTTCTCCAAGGTTGACGGATCTGCGTCCAACTTCTTCAGA
0252404 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO957761.1:556-575
TGTTACGGTTTGATTCGTCAGATTTCAATT556CTTCCAACACCTTCTCCAAGGTTGACGGATCTGCGTCCGGACGCGTGGGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1763.
FX715320.1:561-580
TGTTACGGTTTGATTCGTCAGATTTCAAGT561CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCACA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_302.
FX763989.1:515-534
TGTTACGGTTTGATTCGTCAGATTTCAAGT515CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCACA
TSA: Raphanus sativus RS20318 mRNA sequence.
JT804865.1:676-695
TGTTACGGTTTGATTCGTCAGATTTCAATT676CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
Rattus norvegicus clone CH230-35N14, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC113774.6:66873-66892
TGCTCCCGGGGTAGCAATGTGCATCTGGAC66873CTTCCAACACCTTCTCCAAGTGGCTGGTTCTCCTGACAAGACCATACATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
AC189413.1:521-540
TGTTACGGTTTGATTCGTCAGATTTCAAGT521CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCACCTTCTTCACA
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:34247258-34247277
TGTTACGGTTTGATTCGTCAGATTTCAATT34247258CTTCCAACACCTTCTCCAAGGTTGAGGGATCTGCGTCCAGCTTCTTGAGA
Euonymus europaeus genome assembly, chromosome: 9.
OY756965.1:4402781-4402800
AATCCCTCCCAACCCAACCTTTTCAAACTC4402781CTTCCAACACCTTCTCCAAGCACAGCCAAAATAATAACAATTTAGATATT
Mobula hypostoma genome assembly, chromosome: 14.
OY992605.1:39573683-39573702
GAAACTAAGTTAGCATTTTTGGTCACTTCA39573683CTTGGAGAAGGTGTTGGAAGGGTCAATTAGAACAGTTCCCGAGATGATAG
110f06 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960828.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
117c11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961356.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
221e01w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965077.1:78-97
TGTGAAGAAGGTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
1f4 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965619.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
302d3 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965995.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
8f08 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN966403.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNDH4DCT_UP_008_F04_17DEC2004_022 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.
DY005585.1:93-112
TGTGAAGAAGGTGGACGCAGATCCCTCAAC93CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
19ACACYS_UP_025_C03_29OCT2004_027 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY008361.1:139-158
TGTGAAGAAGGTGGACGCAGATCCCTCAAC139CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
8RDBRH_UP_007_B12_12SEP2003_094 Brassica rapa - 8RDBRH Brassica rapa cDNA 5', mRNA sequence.
DY009312.1:125-144
TGTGAAGAAGGTGGGCGCAGATCCCTCAAC125CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
16ACDHDS_UP_021_G08_26OCT2004_052 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403333.1:201-220
TGTGAAGAAGGTGGACGCAGATCCCTCAAC201CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
32ETGS24_UP_005_G01_11MAR2004_003 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE425898.1:70-89
TGTGAAGAAGGTGGACGCAGATCCCTCAAC70CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS3CT_UP_004_D12_07JAN2005_090 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE465255.1:55-74
TGTGAAGAAGGTGGACGCAGATCCCTCAAC55CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_012_E02_29MAR2004_008 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE523132.1:109-128
TGTGAAGAAGGTGGACGCAGATCCCTCAAC109CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_034_A11_05JUL2004_095 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524824.1:106-125
TGTGAAGAAGGTGGACGCAGATCCCTCAAC106CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_065_H01_05DEC2005_001 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE527023.1:62-81
TGTGAAGAAGGTGGACGCAGATCCCTCAAC62CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNZB_UP_164_B04_29SEP2005_030 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE568461.1:152-171
TGTGAAGAAGGTGGACGCAGATCCCTCAAC152CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BMSB01-T7-02-C11 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG019421.1:93-112
TGTGAAGAAGGTGGACGCAGATCCCTCAAC93CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
26RDBNT_UP_101_D06_09MAR2006_042 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES928256.1:62-81
TGTGAAGAAGGTGGACGCAGATCCCTCAAC62CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
9RDBNGA_UP_222_G04_05NOV2006_020 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES962061.1:140-159
TGTGAAGAAGGTGGACGCAGATCCCTCAAC140CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
44JK5DM_UP_037_D10_01JUL2006_074 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES985198.1:29-48
GGAAGAAGGTGGACGCAGATCCCTCAAC29CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNAEN3GH_UP_020_A07_23JUN2006_063 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994133.1:137-156
TGTGAAGAAGGTGGACGCAGATCCCTCAAC137CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
UCDJRBES23180 Juglans regia MboI library Juglans regia genomic clone JM022E04, genomic survey sequence.
HR215444.1:556-575
CAACAAGTGTTGGACAGATCATATGGAGCA556CTTGGAGAAGGTGTTGGAAGTGTTACAGAAAAATCAGTTGTACGTAAAAC
Rattus norvegicus clone CH230-177A24, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC127133.4:112442-112461
TATGTATGGTCTTGTCAGGAGAACCAGCCA112442CTTGGAGAAGGTGTTGGAAGGTCCAGATGCACATTGCTACCCCGGGAGCA
Brassica rapa subsp. pekinensis clone KBrH071G03, complete sequence.
FP236364.1:21925-21944
TGTGAAGAAGGTGGACGCAGATCCCTCAAC21925CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa subsp. pekinensis clone KBrB009D15, complete sequence.
FP340608.1:18107-18126
TGTGAAGAAGGTGGACGCAGATCCCTCAAC18107CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:60000718-60000737
TGTGAAGAAGGTGGACGCAGATCCCTCAAC60000718CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:44794874-44794893
TGTGAAGAAGGTGGACGCAGATCCCTCAAC44794874CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa genome, scaffold: A06.
LR031569.1:54880202-54880221
TGTGAAGAAGGTGGACGCAGATCCCTCAAC54880202CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:58544484-58544503
TGTGAAGAAGGTGGACGCAGATCCCTCAAC58544484CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:19403243-19403262
TCTCAAGAAGCTGGACGCAGATCCCTCAAC19403243CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCCAACACCTTCTCCAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCAACACCTTCTCCAAG | format : html | download : | debug :

0.008 | 0.008 | search_start;
1.610 | 1.602 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCAACACCTTCTCCAAG&k=0&no_gap=0&offset=0&limit=50
2.740 | 1.130 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGGAGAAGGTGTTGGAAG&k=0&no_gap=0&offset=0&limit=21
2.760 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).