GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:46:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus genome assembly, chromosome: 7.
OW971565.1:95997176-95997195
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC95997176CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971580.1:96517886-96517905
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC96517886CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971601.1:92780388-92780407
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC92780388CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus domesticus genome assembly, chromosome: 7.
OW971628.1:97301146-97301165
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC97301146CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971643.1:96056324-96056343
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC96056324CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus molossinus genome assembly, chromosome: 7.
OW971664.1:105883675-105883694
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC105883675CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971715.1:96483631-96483650
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC96483631CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971727.1:94884915-94884934
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC94884915CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971748.1:99381221-99381240
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC99381221CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus musculus genome assembly, chromosome: 7.
OW971769.1:95014659-95014678
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC95014659CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971790.1:96690227-96690246
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC96690227CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971811.1:100869749-100869768
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC100869749CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus castaneus genome assembly, chromosome: 7.
OW971841.1:99362349-99362368
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC99362349CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OW971859.1:96692353-96692372
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC96692353CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OX389801.1:105191279-105191298
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC105191279CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OX390151.1:106970816-106970835
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC106970816CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Mus musculus genome assembly, chromosome: 7.
OX439021.1:109632287-109632306
TGCTAAATGTTGTTCCTCTTTCTGGTCCCC109632287CTTCCCAGAGTTTTCCCTCATGCCTCCTCCACTTTGCTTATGAGAGGGTG
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:144675504-144675523
GAGAAAAAAATGCAAAAAAGAAAATCCCAT144675504CTTCCCAGAGTTTTCCCTCAACTTCAGACCTTTACGTGAATCTCAACAGA
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:146118464-146118483
GAGAAAAAAATGCAAAAAAGAAAATCCCAT146118464CTTCCCAGAGTTTTCCCTCAACTTCAGACCTTTACGTGAATCTCAACAGA
GR__Ea09I04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea09I04 5', mRNA sequence.
CO089838.1:38-57
AAGCAAACCTATGGGGCTGACCATTACATA38CTTCCCAGAGTTTTCCCTCATTATTACTCCTCTTTCAACTTATACGGAAA
GR__Eb0027P13.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0027P13 3', mRNA sequence.
CO101546.1:52-71
AGCAAACCTATGGGGCTGACACATGACATA52CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
GR__Eb0036B10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0036B10 3', mRNA sequence.
CO105755.1:239-258
AGCAAACCTATGGGGCTGACACATGACATA239CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
GR__Eb45O15.r GR__Eb Gossypium raimondii cDNA clone GR__Eb45O15 3', mRNA sequence.
CO132843.1:181-200
AGCAAACCTATGGGGCTGACACATGACATA181CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
G.hir-15-20 DAA bolls drought stressed 843 15-20 DAA bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN801688.1:236-255
AGCAAACCTATGGGGCTGACACATGACATA236CTTCCCAGAGTTTTCCCTCATGTTTACTCCTGGATCAACTTATACGGGAA
CM110H11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR462725.1:90-109
AAGCAACCTATGGGGCTGACACATGACATA90CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ruio31_m4.y1 kid Sus scrofa cDNA 5', mRNA sequence.
EW295433.2:386-405
GAGAAAAAAATGCAAAAAAGAAAATCCCAT386CTTCCCAGAGTTTTCCCTCAACTTCAGACCTTTACGTGAATCTCAACAGA
rnje30c_o21.y1 nje Sus scrofa cDNA 5', mRNA sequence.
EW450323.2:488-507
GAGAAAAAAATGCAAAAAAGAAAATCCCAT488CTTCCCAGAGTTTTCCCTCAACTTCAGACCTTTACGTGAATCTCAACAGA
mhczaa0_004745.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_004745.z1, mRNA sequence.
JG842673.1:383-402
AGCAAACCTATGGGGCTGACACATGACATA383CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
mhczaa0_015078.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_015078.z1, mRNA sequence.
JG845629.1:382-401
AGCAAACCTATGGGGCTGACACATGACATA382CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCNACTTATACGGAAA
mhczaa0_028370.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_028370.z1, mRNA sequence.
JG848729.1:234-253
AGCAAACCTATGGGGCTGACACATGACATA234CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
mhczaa0_021330.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021330.z1, mRNA sequence.
JG857489.1:361-380
AGCAAACCTATGGGGCTGACACATGACATA361CTTCCCAGAGTTTTCCCTCATGTTTACTCCTGGATCAACTTATACGGTGA
A03-66A03 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794490.1:74-93
AGCAAACCTATGAGGCTGACACATGACATA74CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGTGA
ndcxa0_0022_C02.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ370064.1:328-347
AGCAAACCTATGGGGCTGACACATGACATA328CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxb0_0030_G08.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ373400.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxd0_0005_D03.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ377169.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAGA
ndcxd0_0006_G08.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ377288.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGTTGA
ndcxd0_0032_F11.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379334.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxe0_0010_F07.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380394.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxe0_0012_E06.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380551.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxf0_0006_H01.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ382987.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxf0_0015_D06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383742.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
ndcxf0_0024_E06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384544.1:255-274
AGCAAACCTATGGGGCTGACACATGACATA255CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGAAA
GH_MBb0040E23r GH_MBb Gossypium hirsutum genomic clone GH_MBb0040E23r, genomic survey sequence.
DX527978.2:140-159
AGCAAACCTATGGGGCTGACACATGACATA140CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGTGA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-60I9.
CU929504.2:67588-67607
GAGAAAAAAATGCAAAAAAGAAAATCCCAT67588CTTCCCAGAGTTTTCCCTCAACTTCAGACCTTTACGTGAATCTCAACAGA
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:90578709-90578728
AGCAAACCTATGGGGCTGACACATGACATA90578709CTTCCCAGAGTTTTCCCTCATTATTACTCCTGGATCAACTTATACGGTGA
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:90610551-90610570
AGCAAACCTATGGGGCTGACACATGACATA90610551CTTCCCAGAGTTTTCCCTCATGTTTACTCCTGGATCAACTTATACGGTGA
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:57392197-57392216
AGCAAACCTATGGGGCTGACACATGACATA57392197CTTCCCAGAGTTTTCCCTCATGTTTACTCCTGGATCAACTTATACGGTTT
Gossypium rotundifolium isolate GPK201 chromosome 10.
CP106731.1:69343466-69343485
AGCAAACGTATGGGGCTGACACATGACATA69343466CTTCCCAGAGTTTTCCCTCATGTTTACTCCTGGATCAACTTATACGGTGA
Sphagnum tenellum genome assembly, chromosome: 3.
OY998144.1:27929605-27929624
GTGCCCCACATGCAATGTCTTCCACATAAG27929605CTTCCCAGAGTTTTCCCTCAACTAGCCCTGGCAGCTTCCCATCAGCCTGT
Mus musculus BAC clone RP23-280O10 from 7, complete sequence.
AC116579.4:71609-71628
CACCCTCTCATAAGCAAAGTGGAGGAGGCA71609TGAGGGAAAACTCTGGGAAGGGGGACCAGAAAGAGGAACAACATTTAGCA
Podarcis lilfordi genome assembly, chromosome: 8.
OX395133.1:82463690-82463709
TTAAGCCTCTGCTTGTAATAATTGGTGGGT82463690TGAGGGAAAACTCTGGGAAGAGGTCTTCCAACAACTCTCTTAGCAGCAGC
rayctn0_0123_D09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098692.1:306-325
TTTCCGTATAAGTTGATCCAGGAGTAATAA306TGAGGGAAAACTCTGGGAAGTATGTCATGTGTCAGTCCCATAGGTTTGCT
Gossypioides kirkii chromosome KI_10.
CP032252.1:29326776-29326795
TCACCGTATAAGTTGATCCAGGAGTAAACA29326776TGAGGGAAAACTCTGGGAAGTATGTCATGTGTCCACCCCATAGGTTTGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCCCAGAGTTTTCCCTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCCAGAGTTTTCCCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.097 | 2.089 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCCAGAGTTTTCCCTCA&k=0&no_gap=0&offset=0&limit=50
2.316 | 0.219 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGGGAAAACTCTGGGAAG&k=0&no_gap=0&offset=0&limit=1
2.319 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).