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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:46:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST474689 tomato shoot/meristem Solanum lycopersicum cDNA clone cTOF23K17 5' sequence, mRNA sequence.
BG129043.1:415-433
AGAGGTGCTGACAAACCTCCTACCTTTAAA415CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum cDNA, clone: LC12CG01, 5' end, expressed in leaf.
BP908593.1:229-247
AGAGGTGCTGACAAACCTCCTACCTTTAAA229CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
TSA: Capsicum annuum MA_MegaContig_33223, mRNA sequence.
JW160619.1:1489-1507
AGAGGCGCTGACAAACCTCCCACCTTTAAA1489CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum cDNA, clone: LEFL1054DC02, HTC in leaf.
AK323345.1:1111-1129
AGAGGTGCTGACAAACCTCCTACCTTTAAA1111CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.
AC212652.1:18772-18790
AGAGGTGCTGACAAACCTCCTACCTTTAAA18772CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65833124-65833142
AGAGGTGCTGACAAACCTCCTACCTTTAAA65833124CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63355498-63355516
AGAGGTGCTGACAAACCTCCTACCTTTAAA63355498CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum verrucosum cultivar 11H23 chromosome 7.
CP133618.1:44482744-44482762
AGAGGTGCTGACAAACCTCCTACCTTTAAA44482744CTTCCCGAGGCCATCTCTAATGACAATTGACATATATATACTTCCTAAC
Solanum lycopersicum chromosome ch07, complete genome.
HG975519.1:60679063-60679081
AGAGGTGCTGACAAACCTCCTACCTTTAAA60679063CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64305456-64305474
AGAGGTGCTGACAAACCTCCTACCTTTAAA64305456CTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGAC
Pyrrhosoma nymphula genome assembly, chromosome: 10.
OY754337.1:102988339-102988357
AGAATAAAAGCAAACGTCCTTTTTATCACC102988339CTTCCCGAGGCCATCTCTACGCTGAGAAGTTTCCTCATTGACGAACTCC
KS23017E12 KS23 Capsicum annuum cDNA, mRNA sequence.
GD112578.1:204-222
GTCGGTTAGGAAGTATATGTCAATTGTCAT204TAGAGATGGCCTCGGGAAGTTTAAAGGTGGGAGGTTTGTCAGCGCCTCT
G895P58FO16.T0 C. immitis RS, 48HR MYCELIUM_NORMALIZED Coccidioides immitis cDNA, mRNA sequence.
GH338394.1:645-663
CAAATGCCTGCTGATAAAGTCGTGGCCAGT645TAGAGATGGCCTCGGGAAGCCCTCTGACGTGGATGAAGTCGAAGGGCTC
TSA: Capsicum annuum MGMT_Contig23097, mRNA sequence.
JW073341.1:250-268
GTCGGTTAGGAAGTATATGTCAATTGTCAT250TAGAGATGGCCTCGGGAAGTTTAAAGGTGGGAGGTTTGTCAGCGCCTCT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:245573217-245573235
GTCGGTTAGGAAGTATATGTCAATTGTCAT245573217TAGAGATGGCCTCGGGAAGTTTAAAGGTGGGAGGTTTGTCAGCGCCTCT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 8.
CP124712.1:137284427-137284445
AGTCGGTTAGAAGTATATGTCAATTGTCAT137284427TAGAGATGGCCTCGGGAAGTTTAAAGGTAGGAGGTTTGTCAGCGCCTTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:248682630-248682648
GTCGGTTAGGAAGTATATGTCAATTGTCAT248682630TAGAGATGGCCTCGGGAAGTTTAAAGGTGGGAGGTTTGTCAGCGCCTCT
Solanum pennellii chromosome ch07, complete genome.
HG975446.1:72699382-72699400
GTCGGTTAGGAAGTATATGTCAATTGTCAT72699382TAGAGATGGCCTCGGGAAGTTTAAAGGTAGGAGGTTTGTCAGCACCTCT
Solanum dulcamara genome assembly, chromosome: 6.
OX359257.1:5397843-5397861
TATCACTAGGAAGTGTATGTCAATTGTCAT5397843TAGAGATGGCCTCGGGAAGTTTAAAGGTAGGAGGTTTGTCAGCGCCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCCCGAGGCCATCTCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCCGAGGCCATCTCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.144 | 0.135 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCCGAGGCCATCTCTA&k=0&no_gap=0&offset=0&limit=50
0.357 | 0.213 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAGATGGCCTCGGGAAG&k=0&no_gap=0&offset=0&limit=39
0.362 | 0.005 | cgi_end;

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