GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:07:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-025A06, 3' end sequence.
DK524726.1:755-774
CAACTTTTGTGATCAATCATCTTTTCTAAA755CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. viridis mRNA, clone: KALE-066B18, 3' end sequence.
DK540414.1:677-696
CAACTTTTGTGATCAATCATCTTTTCTAAA677CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. viridis mRNA, clone: KALE-066K13, 3' end sequence.
DK540625.1:695-714
CAACTTTTGTGATCAATCATCTTTTCTAAA695CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. viridis mRNA, clone: KALE-080D23, 3' end sequence.
DK545819.1:662-681
CAACTTTTGTGATCAATCATCTTTTCTAAA662CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. viridis mRNA, clone: KALE-080N06, 3' end sequence.
DK546042.1:728-747
CAACTTTTGTGATCAATCATCTTTTCTAAA728CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. viridis mRNA, clone: KALE-096D03, 3' end sequence.
DK551922.1:708-727
CAACTTTTGTGATCAATCATTTTTTTTAAA708CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
BNQA_UP_124_G08_09NOV2005_052 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE554919.1:306-325
CAACTTTTGTGATCAATCATCTTTTCTAAA306CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
OL8947R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8947, mRNA sequence.
EH429079.1:552-571
CAACTTTTGTGATCAATCATCTTTTCTAAA552CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica oleracea var. botrytis non-green plastid inner envelope membrane protein precursor (BOIMP8) mRNA, complete cds.
U13631.1:1146-1165
CAACTTTTGTGATCAATCATCTTTTCTAAA1146CTTCCGTGTACTGTATTTGGATTTGGTGGTGGTCCTTTTACCACATATCA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:7393516-7393535
TGATATGTGGTAAAAGGACCACCACCAAAT7393516CCAAATACAGTACACGGAAGTTTAGAAAAGATGATTGATCACAAAAGTTG
Brassica napus genome assembly, chromosome: C04.
HG994368.1:7194633-7194652
TGATATGTGGTAAAAGGACCACCACCAAAT7194633CCAAATACAGTACACGGAAGTTTAGAAAAGATGATTGATCACAAAAGTTG
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:6890818-6890837
TGATATGTGGTAAAAGGACCACCACCAAAT6890818CCAAATACAGTACACGGAAGTTTAGAAAAGATGATTGATCACAAAAGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCCGTGTACTGTATTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCGTGTACTGTATTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.625 | 0.616 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCGTGTACTGTATTTGG&k=0&no_gap=0&offset=0&limit=50
0.669 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAATACAGTACACGGAAG&k=0&no_gap=0&offset=0&limit=41
0.671 | 0.002 | cgi_end;

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