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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:26:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sardina pilchardus genome assembly, chromosome: 23.
OY974108.1:24342033-24342051
TCCCCTCTTGCGTCACGTCATCACATTCCT24342033CTTCCTCCGTTCTCCGTTTCACACCTTTCCCGTTTCGAAACGTTCCGGA
CCAG4227.g1 CCAG Petrolisthes cinctipes heart, gills, whole crab (N) Petrolisthes cinctipes cDNA clone CCAG4227 3', mRNA sequence.
FE768204.1:71-89
CATTCCCTAATCTCCAGTTCACGTTCTTCT71CTTCCTCCGTTCTCCGTTTTACCTTCCTTCGTCGTGCCGTTTACCGCCC
CCAG14519.g1 CCAG Petrolisthes cinctipes heart, gills, whole crab (N) Petrolisthes cinctipes cDNA clone CCAG14519 3', mRNA sequence.
FE785681.1:71-89
CATTCCCTAATCTCCAGTTCACGTTCTTCT71CTTCCTCCGTTCTCCGTTTTACCTTCCTTCGTCGTGCCGTTTACCGCCC
CTFOL34SA Termite Coptotermes formosanus metatranscriptomic library Coptotermes formosanus cDNA clone CTFO 5', mRNA sequence.
JK473697.1:448-466
CAGTATTTACTGCATACTGGCATCCTGGCA448CTTCCTCCGTTCTCCGTTTGTCTCAGTTTCGTAGTGCAAAGGGGGACGC
TSA: termite metagenome Contig16123 mRNA sequence.
JP004197.1:448-466
CAGTATTTACTGCATACTGGCATCCTGGCA448CTTCCTCCGTTCTCCGTTTGTCTCAGTTTCGTAGTGCAAAGGGGGACGC
Solanum tuberosum cultivar Solyntus chromosome 8.
CP055241.1:63310503-63310521
TTGAAAGGCTTGGTCTTTAGTATCCAGATA63310503CTTCCTCCGTTCTCCGTTTGTTTCAATTTGTTTGTACCTTGTAGTCCGT
Solanum verrucosum cultivar 11H23 chromosome 8.
CP133619.1:50264343-50264361
TTGAAAGGCTTGGTCTTTAGTATCCACATA50264343CTTCCTCCGTTCTCCGTTTCAATTTGTTTGTACTTTGTAGTCCGTTTAA
XXX.
LR721777.1:18717695-18717713
GGGTTCCCTACTGCTCCACCTGCTCCTCCG18717695CTTCCTCCGTTCTCCGTTTCACCCGCCTGCAGCCCCTCAGCTGGTGCTT
Impatiens glandulifera genome assembly, chromosome: 9.
OU015489.1:20421996-20422014
TTAAAGGCCAAACCCTACTTCGTCAGCCTT20421996CTTCCTCCGTTCTCCGTTTCAACCACCCAACAACCATCCGATCATCCTA
Vespa crabro genome assembly, chromosome: 1.
OU342400.1:6388123-6388141
CGTATTTTCTCTCTCTTTATCTCTCTATCT6388123CTTCCTCCGTTCTCCGTTTTATTCTACCCCCTCTTTTTCTTCTCCTTTC
Andrena minutula genome assembly, chromosome: 7.
OV815999.1:29593133-29593151
AAGATCGTCGCTGGAGCGTGAATCAAAGCA29593133CTTCCTCCGTTCTCCGTTTCACGGTAACCAGATTAACGGACAAATAAGG
Tenthredo mesomela genome assembly, chromosome: 1.
OX031013.1:55753861-55753879
GTTTTCGCTCTTCAGTCTCCGCTTTCAGTT55753861CTTCCTCCGTTCTCCGTTTTCTATATTTCTGGTTTTCTCCCCGTACCGA
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:31057502-31057520
GTGAGACACCCCGACGAATTAATAACGGGA31057502CTTCCTCCGTTCTCCGTTTTCCCGTATGTTGCAGAAGCATTGTTGCATT
Ferdinandea cuprea genome assembly, chromosome: 1.
OY754958.1:39053064-39053082
ATGAAGTTAATATCATTAAGCAGTGATAAT39053064CTTCCTCCGTTCTCCGTTTTTCCTCCGTCTTCTGTTCTTCTTTCGTCTC
Eutolmus rufibarbis genome assembly, chromosome: 5.
OY987208.1:25607617-25607635
CTCCTCCGATTTCGTTGTACTTCTTCTGCA25607617CTTCCTCCGTTCTCCGTTTTGCAATCCACGGCCCAAGGAACCTTTGAAA
PP_LBa0036-G10.F PP_LBa Prunus persica genomic 5', genomic survey sequence.
FI977121.1:37-55
TGACCCTTTGCTCCTTTACCTGAAAAGTGA37AAACGGAGAACGGAGGAAGAGACATCTCGATCTTCTGTGAATTGCAAAT
Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:30076640-30076658
CGACCCTTTGCTTCTTTACCTGAAAAGTGA30076640AAACGGAGAACGGAGGAAGAGACATCTCGATCTTCTGTGAATTGCAAAT
Machimus rusticus genome assembly, chromosome: 5.
OX608053.1:8832157-8832175
TTTCAAAGGTTCCTTGGGCCGTGGATTGCT8832157AAACGGAGAACGGAGGAAGTGCAGAAGAAGTACGGCGAAATCGGAGGAG
Tipula helvola genome assembly, chromosome: 3.
OY744483.1:202008823-202008841
ACTTACATTCATTTCAGAGCAAAAATTTAC202008823AAACGGAGAACGGAGGAAGCTCAGAGTATGTTCAGTTCACATTAAAAAA
Hololepta plana genome assembly, chromosome: 11.
OY968842.1:150162-150180
CCCTAATAATGAGGTTAAGTTCGGAAGAAA150162AAACGGAGAACGGAGGAAGAAGGTCCATCTGTTTTTGGAACCGTCGTTG
Phaonia tiefii genome assembly, chromosome: 4.
OZ008370.1:52285337-52285355
GTGTCTGAGGACTCTCAACACGGAATGGAG52285337AAACGGAGAACGGAGGAAGAACCAATTTATTAGGACATAGTCGGTGGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCCTCCGTTCTCCGTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCTCCGTTCTCCGTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.447 | 0.439 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCTCCGTTCTCCGTTT&k=0&no_gap=0&offset=0&limit=50
0.578 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=AAACGGAGAACGGAGGAAG&k=0&no_gap=0&offset=0&limit=35
0.582 | 0.004 | cgi_end;

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