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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-12 00:30:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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614087B04.x1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence.
AW059963.1:221-240
CAAGAGATTGTTTATGGATTCAGGGTAAAA221CTTCCTCGCAAACAGGTAGCATGGCCTCTTTGCTCCATTCCATAGGCAGG
HRO4521_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena sativa cDNA clone HRO4521_F01_K01, mRNA sequence.
CN816509.1:437-456
CATGAGATTGTTTATGGATTCGGGGTAGAA437CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
ZM_BFb0292K09.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DY538835.1:346-365
CAAGAGATTGTTTATGGATTCAGGGTAGAA346CTTCCTCGCAAACAGGTAGCATGGCCTCTTTGCTCCATTCCATAGGCAGG
Zea mays cultivar B73 chromosome 10 clone CH201-428H14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC214233.5:5050-5069
CAAGAGATTGTTTATGGATTCAGGGTAGAA5050CTTCCTCGCAAACAGGTAGCATGGCCTCTTTGCTCCATTCCATAGGCAGG
Zea mays cultivar B73 chromosome 10 clone CH201-482B11, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC215988.4:143227-143246
CAAGAGATTGTTTATGGATTCAGGGTAGAA143227CTTCCTCGCAAACAGGTAGCATGGCCTCTTTGCTCCATTCCATAGGCAGG
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 4.
CP125976.1:37347534-37347553
CATGAGATTGTTTATGGATTCGGGGTAGAA37347534CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Sorghum bicolor cultivar Hongyingzi chromosome 6.
CP137830.1:60485369-60485388
CAAGAGATTATTTATGGATTCAGGGTAGAA60485369CTTCCTCGCAAACAGGTAGCATGGTCTCTTTGCTCCATTCCATAGGCAGG
Sorghum bicolor cultivar Huandiaonuo chromosome 6.
CP137840.1:60998099-60998118
CAAGAGATTATTTATGGATTCAGGGTAGAA60998099CTTCCTCGCAAACAGGTAGCATGGTCTCTTTGCTCCATTCCATAGGCAGG
Zea mays genome assembly, chromosome: 10.
LR897976.1:147209733-147209752
CAAGAGATTGTTTATGGATTCAGGGTAGAA147209733CTTCCTCGCAAACAGGTAGCATGGCCTCTTTGCTCCATTCCATAGGCAGG
Avena insularis genome assembly, chromosome: 2D.
OU342346.1:387906587-387906606
CATGAGATTGTTTATGGATTCGGGGTAGAA387906587CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena sativa genome assembly, chromosome: 2A.
OU342379.1:376085696-376085715
CATGAGATTGTTTATGGATTCGGGGTAGAA376085696CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena sativa genome assembly, chromosome: 2D.
OU342393.1:166730719-166730738
CATGAGATTGTTTATGGATTCGGGGTAGAA166730719CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena atlantica genome assembly, chromosome: 2A.
OU342734.1:452652991-452653010
CATGAGATTGTTTATGGATTCGGGGTAGAA452652991CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:414145340-414145359
CATGAGATTGTTTATGGATTCAGGGTAGAA414145340CTTCCTCGCAAACAGGTAGCATGGTCTCTTCGCTCCATTCCATAAGCAAG
Avena longiglumis genome assembly, chromosome: 2A.
OU342748.1:553854167-553854186
CATGAGATTGTTTATGGATTCGGGGTAGAA553854167CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena sativa genome assembly, chromosome: 2.
OV702280.1:381781596-381781615
CATGAGATTGTTTATGGATTCGGGGTAGAA381781596CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Avena sativa genome assembly, chromosome: 16.
OV702294.1:175513045-175513064
CATGAGATTGTTTATGGATTCGGGGTAGAA175513045CTTCCTCGCAAACAGGTAGCATGGTCTCTTCATACCATTCCATAAGCAAG
Alisma plantago-aquatica genome assembly, chromosome: 6.
OY856414.1:592103936-592103955
CATGAGTCTATCCAGCGAATTGGGCAAGAA592103936CTTCCTCGCAAACAGGTAGCACATATTGGTGGTCTCCCCATTATACGTGC
Sequence 23166 from patent US 7750207.
GX329091.1:1085-1104
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1085GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Sequence 31495 from patent US 7834146.
GX763316.1:222-241
CCTGCCTATGGAATGGAGCAAAGAGACCAT222GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
Sequence 31495 from patent US 8106174.
GZ106187.1:222-241
CCTGCCTATGGAATGGAGCAAAGAGACCAT222GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
Sequence 21250 from patent US 8362325.
GZ771668.1:2282-2301
CCTGCCTATGGAATGGAGCAAAGAGACCAT2282GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
Sequence 177861 from Patent EP2090662.
HB828647.1:1635-1654
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1635GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Sequence 177891 from Patent EP2090662.
HB828677.1:1635-1654
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1635GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Sequence 21250 from patent US 9701726.
KH863835.1:2282-2301
CCTGCCTATGGAATGGAGCAAAGAGACCAT2282GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
PIC1_53_F07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence.
BM330566.1:222-241
CCTGCCTATGGAATGGAGCAAAGAGACCAT222GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
RHOH1_26_D12.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_26_D12_A002 3', mRNA sequence.
CN127962.1:473-492
CCTGCCTATGGAATGGAGCAAAGAGACCAT473GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
GABR1_8_H08.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_8_H08_A002 3', mRNA sequence.
CX613474.1:369-388
CCTGCCTATGGAATGGAGCAAAGAGACCAT369GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAATAATCTCTTG
3496740 CERES-264 Zea mays cDNA clone 687174 5', mRNA sequence.
FL063293.1:233-252
CCTGCCTATGGAATGGAGCAAAGAGGCCAT233GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
2002873 CERES-227 Zea mays cDNA clone 398125 3', mRNA sequence.
FL461635.1:223-242
CCTGCCTATGGAATGGAGCAAAGAGGCCAT223GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
RDD_cLiFpEfI12nb_18x1_3_L03_cLibkit5_F02 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 18L03 5', mRNA sequence.
GO889800.1:414-433
CTTGCCTATGGAATGGAGTGAAGAGACCGT414GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATGAACAATCTCATG
RDD_cLiFpEfI12nb_19x1_3_H07_cLibkit5_D04 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 19H07 5', mRNA sequence.
GO890065.1:363-382
CTTGCCTATGGAATGGAGTGAAGAGACCGT363GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATGAACAATCTCATG
RDD_cLiFpEfI12nb_19x1_4_N04_cLibkit5_G02 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 19N04 5', mRNA sequence.
GO890185.1:363-382
CTTGCCTATGGAATGGAGTGAAGAGACCGT363GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATGAACAATCTCATG
ZMMBBb0306O08.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0306O08 5', genomic survey sequence.
CC881734.1:151-170
CCTGCCTATGGAATGGAGCAAAGAGGCCAT151GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACTTTCTTTTG
Zea mays full-length cDNA clone ZM_BFc0058G07 mRNA, complete cds.
BT067486.1:1187-1206
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1187GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Zea mays full-length cDNA clone ZM_BFb0141A15 mRNA, complete cds.
BT068362.1:1694-1713
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1694GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Zea mays full-length cDNA clone ZM_BFb0304N21 mRNA, complete cds.
BT069196.1:1171-1190
CCTGCCTATGGAATGGAGCAAAGAGGCCAT1171GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Zea mays cultivar LT2357 chromosome 10.
CP116748.1:9033590-9033609
CCTGCCTATGGAATGGAGCAAAGAGGCCAT9033590GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 4.
CP125976.1:37623767-37623786
CTTGCTTATGGAATGGTATGAAGAGACCAT37623767GCTACCTGTTTGCGAGGAAGTTCTACCCCGAATCCATAAACAATCTCATG
Zea mays clone 398125 mRNA sequence.
EU973399.1:963-982
CCTGCCTATGGAATGGAGCAAAGAGGCCAT963GCTACCTGTTTGCGAGGAAGTTCTACCCTGAATCCATAAACAATCTCTTG
Hordeum bulbosum genome assembly, chromosome: 1H_2.
OY737873.1:9615820-9615839
GCACCGATGGTGGAGGGAACACATCGGTTT9615820GCTACCTGTTTGCGAGGAAGTTCCCATCACGCGCGTTGCCGGAGCTGCTC
Daphnia pulex isolate KAP106 chromosome 5.
CP087231.1:429792-429811
AATTGATGAGAAACCGGAAAAACCACAGCC429792GCTACCTGTTTGCGAGGAAGAAAAGCAAAAGCCTTTGAAGCATTTCCAAA
Daphnia pulex isolate STM2 chromosome 5.
CP087255.1:342192-342211
AATGGATGAGAAACCGGAAAAACCACAGCC342192GCTACCTGTTTGCGAGGAAGAAAAGCAAAAGCCTTTGAAGCATTTCAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTCCTCGCAAACAGGTAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCCTCGCAAACAGGTAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.245 | 0.236 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCCTCGCAAACAGGTAGC&k=0&no_gap=0&offset=0&limit=50
1.137 | 0.892 | search_minus_done; http://172.18.8.135:50400/match?q=GCTACCTGTTTGCGAGGAAG&k=0&no_gap=0&offset=0&limit=32
1.154 | 0.017 | cgi_end;

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