GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 06:54:10, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PPTDS12TR Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY153_A23, genomic survey sequence.
ER822024.1:120-143
TGATACGCGAACCTGCAGAGACCAAGCATC120CTTCTAGTAGTCCAACAGCAACTGATACTGCTACTCCTGTAGCCCGTAAAGGTC
Solanum lycopersicum clone C03HBa0203C09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC238461.1:32741-32764
GACCTTTACGGGCTACAGGAGTAGCAGTAT32741CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum lycopersicum Micro-Tom DNA, chromosome 3, draft genome sequence.
AP028937.1:1076788-1076811
GACCTTTACGGGCTACAGGAGTAGCAGTAT1076788CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum lycopersicum cultivar I-3 chromosome 3.
CP023759.1:221394-221417
GACCTTTACGGGCTACAGGAGTAGCAGTAT221394CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum tuberosum cultivar P8 chromosome 3.
CP046682.1:417766-417789
GACCTTTACGGGCTACAGGAGTAGCAGTAT417766CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum tuberosum cultivar MSH/14-112 chromosome 3.
CP046696.1:417836-417859
GACCTTTACGGGCTACAGGAGTAGCAGTAT417836CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCRCGTATCA
Solanum pinnatisectum cultivar CGN17745 chromosome 3.
CP047566.1:415963-415986
GACCTTTACGGGCTACAGGAGTAGCAGTAT415963CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum tuberosum cultivar Solyntus chromosome 3.
CP055236.1:317351-317374
GACCTTTACGGGCTACAGGAGTAGCAGTAT317351CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum verrucosum cultivar 11H23 chromosome 3.
CP133614.1:364306-364329
GACCTTTACGGGCTACAGGAGTAGCAGTAT364306CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCACGTATCA
Solanum pennellii chromosome ch03, complete genome.
HG975442.1:225159-225182
GACCTTTACGGGCTACTGGAGTAGCAGTAT225159CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum lycopersicum chromosome ch03, complete genome.
HG975515.1:221395-221418
GACCTTTACGGGCTACAGGAGTAGCAGTAT221395CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum lycopersicum genome assembly, chromosome: 3.
OU640346.1:437755-437778
GACCTTTACGGGCTACAGGAGTAGCAGTAT437755CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum dulcamara genome assembly, chromosome: 7.
OX359258.1:78491362-78491385
GACCTTTACGGGCTACAGGAGTAGCAGTAT78491362CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum nigrum genome assembly, chromosome: 11.
OZ176022.1:84231626-84231649
GACCTTTACGGGCTACAGGAGTAGCAGTAT84231626CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA
Solanum nigrum genome assembly, chromosome: 26.
OZ176037.1:65608745-65608768
GACCTTTACGGGCTACCGGAGTAGCAGTAT65608745CAGTTGCTGTTGGACTACTAGAAGGATGCTTGGTCTCTGCAGGTTCGCGTATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCTAGTAGTCCAACAGCAACTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCTAGTAGTCCAACAGCAACTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.176 | 0.166 | search_plus_done; http://172.18.8.135:50800/match?q=CTTCTAGTAGTCCAACAGCAACTG&k=0&no_gap=0&offset=0&limit=50
0.255 | 0.079 | search_minus_done; http://172.18.8.135:50800/match?q=CAGTTGCTGTTGGACTACTAGAAG&k=0&no_gap=0&offset=0&limit=49
0.264 | 0.009 | cgi_end;

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