GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:19:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHLO53TR BOHL Brassica oleracea genomic clone BOHLO53, genomic survey sequence.
BH445462.1:458-479
AACAGCCTCGCCGTGGCAGCTCCGATCCCT458CTTGCTCCTCCGGTTATTATGGCTACCTTCTTATTTAGTC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:35493348-35493369
AACAGCCTCGCCGTGGCAGCTCCGATCCCT35493348CTTGCTCCTCCGGTTATTATGGCTACCTTATTGTTTAATGTTTTGTTTAAGT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:22294420-22294441
AACAGCCTCGCCGTGGCAGCTCCGATCCCT22294420CTTGCTCCTCCGGTTATTATGGCTACCTTATTGTTTAGTCTTTTGTTTGAGT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:35925777-35925798
AACAGCCTCGCCGTGGCAGCTCCGATCCCT35925777CTTGCTCCTCCGGTTATTATGGCTACCTTCTTATTTAGTCTTTTGTTTGAGT
Brassica rapa genome, scaffold: A01.
LR031571.1:27370945-27370966
AACAGCCTCGCCGTGGCAGCTCCGATCCCT27370945CTTGCTCCTCCGGTTATTATGGCTACCTTATTGTTTAATGTTTTGTTTAAGT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:35750105-35750126
AACAGCCTCGCCGTGGCAGCTCCGATCCCT35750105CTTGCTCCTCCGGTTATTATGGCTACCTTCTTATTTAGTCTTTTGTTTGAGT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:27897332-27897353
AACAGCCTCGCCGTGGCAGCTCCGATCCCT27897332CTTGCTCCTCCGGTTATTATGGCTACCTTATTGTTTAATGTTTTGTTTAAGT
0139317 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149588.1:79-100
GCTCAAACAAAAGACTAAATAAGAAGGTAG79CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
0139477 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149676.1:78-99
CGCTCAAACAAATCCTAAATAAGAAGGTAG78CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
0139834 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149912.1:77-98
GCTCAAACAAATCACTAAATAAGAAGGTAG77CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
0139919 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149997.1:79-100
CGCTCAAACAAATCCTAAATAAGAAAGTAG79CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
BR038742 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-132E11 5', mRNA sequence.
EX054098.1:32-53
ACTCAAACAAAAGACTAAACAATAAGGTAG32CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
BR039430 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-141C07 5', mRNA sequence.
EX054786.1:26-47
AACAAAAGACTAAACAATAAGGTAG26CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
RS3C961TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904534.1:41-62
ACTTAAACAAAACATTAAACAACAAGGTAG41CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
RR1EZ57TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD533758.1:51-72
ACGTAAACAAAAGATTAAACAACAAGGTAG51CCATAATAACCGGAGGAGCAAGAGGGATGGGAGCTGCCACGGCTAGGCTGTT
RS2FH22TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570664.1:13-34
GGAACAAGGTAG13CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGATAGGCTGTT
RS2GE52TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946715.1:68-89
ACGTAAACAAAAGATTAAACAACAAGGTAG68CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
RS3FZ88TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954656.1:51-72
ACTTAAACAAAACATTAAACAACAAGGTAG51CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
RS3GL31TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD956472.1:53-74
ACTTAAACAAAACATTAAACAACAAGGTAG53CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
RS3GQ88TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD956968.1:51-72
ACTTAAACAAAACATTAAACAACAAGGTAG51CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
acpp-17 Ogura CMS line and its maintainer of non-heading Chinese cabbage Brassica rapa subsp. chinensis cDNA similar to alcohol dehydrogenase, mRNA sequence.
GW315362.1:4-25
TAG4CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:14540184-14540205
ACTCAAACAAAAGACTAAATAAGAAGGTAG14540184CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCGAGGCTGTT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:7451707-7451728
ACTTAAACAAAACATTAAACAACAAGGTAG7451707CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:7451707-7451728
ACTTAAACAAAACATTAAACAACAAGGTAG7451707CCATAATAACCGGAGGAGCAAGAGGGATCGGAGCTGCCACGGCTAGGCTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGCTCCTCCGGTTATTATGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGCTCCTCCGGTTATTATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGCTCCTCCGGTTATTATGG&k=0&no_gap=0&offset=0&limit=50
2.057 | 1.928 | search_minus_done; http://172.18.8.135:50400/match?q=CCATAATAACCGGAGGAGCAAG&k=0&no_gap=0&offset=0&limit=43
2.068 | 0.011 | cgi_end;

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