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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:31:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rhinatrema bivittatum genome assembly, chromosome: 9.
LR584395.1:166494074-166494093
TCCAGCTAGGGAACTGTTGATGCATTAAGC166494074CTTGGCACCATCAACACATCGGAGCTAGAAGCCCTTGATGCCTCAACCTC
Alternaria alternata strain Z7 chromosome 1, complete sequence.
CP061875.1:5948485-5948504
GGCAATGTACACAGTCAGATGACGTAATCA5948485CTTGGCACCATCAACACATCTCCAGCAGTCATTGCTTATCATAAATCGAT
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737398.1:123797328-123797347
GGTACCTTTGTCAAGGTACAGAACCGAGTA123797328CTTGGCACCATCAACACATCCAAAACTGATATAAACTGCCTGGCATTGCA
UCRPT01_0006E02_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0006E02, mRNA sequence.
CV705014.1:299-318
TGTATAAGAACAAGAGTACTCGTTCAGCAT299GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
UCRPT01_0009H17_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0009H17, mRNA sequence.
CV707196.1:569-588
TGTATAAGAACAAGAGTACTCGTTCAGCAG569GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
UCRPT01_0012G01_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0012G01, mRNA sequence.
CV709115.1:430-449
TGTATAAGAACAAGAGTACTCGTTCAGCAG430GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
UCRPT01_0013I14_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013I14, mRNA sequence.
CV709874.1:454-473
TGTATAAGAACAAGAGTACTCGTTCAGCAG454GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
IC0AAA58CE10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY283129.1:721-740
TGTATAAGAACAAGAGTACTCGTTCAGCAG721GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CS00-C3-702-056-A08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY715567.1:607-626
TGTATAAGAACAAGAGTACTCGTTCAGCAG607GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CS00-C3-704-057-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY732235.1:464-483
TGTATAAGAACAAGAGTACTCGTTCAGCAG464GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CS00-C3-704-063-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY732560.1:465-484
TGTATAAGAACAAGAGTACTCGTTCAGCAG465GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CS00-C3-705-076-G07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY740777.1:536-555
TGTATAAGAACAAGAGTACTCGTTCAGCAG536GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CR05-C1-102-092-D05-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY773711.1:20-39
AAGAGTACTCGTTCAGCAG20GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CR05-C3-702-049-C06-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY804632.1:229-248
TGTATAAGAACAAGAGTACTCGTTCAGCAG229GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
CG32-C1-003-080-F03-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY857074.1:497-516
TGTATAAGAACAAGAGTACTCGTTCAGCAG497GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
IC0AAA58CE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58CE10, mRNA sequence.
FC882655.1:717-736
TGTATAAGAACAAGAGTACTCGTTCAGCAG717GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT
Alternaria alternata strain DZ chromosome 1.
CP123354.1:856704-856723
ATCGATTTATGATAAGCAATGACTGCTGGA856704GATGTGTTGATGGTGCCAAGTGATTACGTCATCTGACTGTGTACATTGCC
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:7815392-7815411
TGTATAAGAACAAGAGTACTCGTTCAGCAG7815392GATGTGTTGATGGTGCCAAGGCTCCGCTTGGATACGTCGAAACTGATCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGGCACCATCAACACATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGCACCATCAACACATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.310 | 0.301 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGCACCATCAACACATC&k=0&no_gap=0&offset=0&limit=50
1.009 | 0.699 | search_minus_done; http://172.18.8.135:50400/match?q=GATGTGTTGATGGTGCCAAG&k=0&no_gap=0&offset=0&limit=47
1.019 | 0.010 | cgi_end;

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