GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:56:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arvicola amphibius genome assembly, chromosome: 1.
LR862380.1:3212553-3212572
GGCTTCACAAACAAATTGTAGTTACAAACT3212553CTTGGCCATCATGCATCTGTCAGAGCTTCTCTCTACAGACACTGGTACCC
Danio aesculapii genome assembly, chromosome: 4.
LR812500.1:14163911-14163930
ATCCACACTAAAGGTCTACGTAGCAGCCAT14163911CTTGGCCATCATGCATCTGTGAATGGTTCCTCTTGGGGTCTGCTAGCCTA
Spirodela polyrhiza strain 9509 chromosome 5, partial sequence.
CP019097.1:5960414-5960433
TGTGCATTTTCTCCTAAATTCAGTCCCATT5960414CTTGGCCATCATGCATCTGTGTTCTGTATTTGAATTTATTGTCTCCATAA
Setaria viridis cultivar ME034v chromosome 4.
CP050798.1:3349815-3349834
TACCCGGAATTTGGACCGTACCTTTTCCCA3349815CTTGGCCATCATGCATCTGTGGCCACATGTGGAGGGAGAGGGAGAGGCAG
Steromphala cineraria genome assembly, chromosome: 14.
OU744733.1:23649555-23649574
TCACTATACCATATGTCCGTTGTGAAACAT23649555CTTGGCCATCATGCATCTGTGACATCACTTTACCATGTCTGTTGTGTGAC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:10116143-10116162
ACTCTTTAACTTTTTCTTGTATTGGTTATA10116143ACAGATGCATGATGGCCAAGATGGCAGGCATCGGCAGATTGGTCGGTTTT
Pocota personata genome assembly, chromosome: 1.
OY720429.1:112631263-112631282
CCCACTTCCGCGGAAACGTTCATTGTGGAT112631263ACAGATGCATGATGGCCAAGAGAAGGTGGTTGTGTACTTCAGCAAGGTGC
Pocota personata genome assembly, chromosome: 1.
OY720429.1:166041805-166041824
ACCACTCCCGGGGAAACGTTAATTGTAGAT166041805ACAGATGCATGATGGCCAAGAGAAGGTGGTCGCGTACTTCAGCAAGGTGC
Pocota personata genome assembly, chromosome: 2.
OY720430.1:109822744-109822763
TAGTAATGTCGGGGTAGGAGCCGTACTCTA109822744ACAGATGCATGATGGCCAAGAGAAGGTGGTTGCGTACTTCAGCAAGGTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGGCCATCATGCATCTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGCCATCATGCATCTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGCCATCATGCATCTGT&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=ACAGATGCATGATGGCCAAG&k=0&no_gap=0&offset=0&limit=45
0.150 | 0.003 | cgi_end;

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