GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:52:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-9071 Pericarp Coffea canephora cDNA clone cccp7j1 5', mRNA sequence.
DV673139.1:260-283
GCATTTTTCCGCTACCTTCTGTCAGTGGTT260CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA
CGN-11587 Pericarp Coffea canephora cDNA clone cccp22i16 5', mRNA sequence.
DV674857.1:260-283
GCATTTTTCCGCTACCTTCTGTCAGTGGTT260CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA
CGN-40442 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w7m17 5', mRNA sequence.
DV695542.1:747-770
GCATTTTTCCGCTACCTTCTGTCAGTGGTT747CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA
TransId-273308 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_52-G01-PAL17d similar to Casein kinase - Beta vulgaris (Sugar beet), mRNA sequence.
GT018114.1:435-458
AGTTTTTTCCGCTACCTTCTGTCAGTGGTT435CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA
TransId-275596 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_78-A10-PAL17d similar to Casein kinase - Beta vulgaris (Sugar beet), mRNA sequence.
GT018958.1:435-458
AGTTTTTTCCGCTACCTTCTGTCAGTGGTT435CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA
TransId-275608 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_78-B10-PAL17d similar to Casein kinase - Beta vulgaris (Sugar beet), mRNA sequence.
GT018964.1:435-458
AGTTTTTTCCGCTACCTTCTGTCAGTGGTT435CTTGGCGTTTAGCGTTCTCACATTTTTCTTGTTTCCGTCCTATATATATATATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGGCGTTTAGCGTTCTCACATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGCGTTTAGCGTTCTCACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.501 | 0.492 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGCGTTTAGCGTTCTCACATT&k=0&no_gap=0&offset=0&limit=50
0.534 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=AATGTGAGAACGCTAAACGCCAAG&k=0&no_gap=0&offset=0&limit=44
0.534 | 0.000 | cgi_end;

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