GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-25 03:41:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Scyliorhinus canicula genome assembly, chromosome: 12.
LR744041.1:50446967-50446986
GCACCACAATAGTAGATTTTTTTGTTGGCC50446967CTTGGGATGCTTTGTTTGGTGCTGAATTTACTCCTAATATGCCCCCTCCT
Sequence 6 from Patent EP3149187.
MS856300.1:1373-1392
CACAGATGGTGGTGTCTGCACTGAGTGGTC1373CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Sequence 6 from patent US 11345908.
OO241737.1:1373-1392
CACAGATGGTGGTGTCTGCACTGAGTGGTC1373CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
sn08f12.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-10920 5' similar to TR:O04077 O04077 SUCROSE TRANSPORT PROTEIN, mRNA sequence.
BE057901.1:298-317
CACAGATGGTGGTGTCTACATTAAGTGGTC298CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGT
sam93g12.y2 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-1847 5' similar to TR:O04077 O04077 SUCROSE TRANSPORT PROTEIN, mRNA sequence.
BM522503.1:84-103
CACAGATGGTGGTGTCTACATTAAGTGGTC84CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGT
sar22c12.y1 Gm-c1049 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1049-7415 5' similar to TR:O04077 O04077 SUCROSE TRANSPORT PROTEIN, mRNA sequence.
BU083528.1:167-186
CACAGATGGTGGTGTCTACATTAAGTGGTC167CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGT
RTS_107_G06 Phaseolus vulgaris P- root EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV541611.1:287-306
CACAGATGGTGGTGTCTGCACTGAGTGGTC287CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
RS6 Glycine max cv. BX10 root short-term (RS) SSH library Glycine max cDNA, mRNA sequence.
FD480368.1:480-499
CACAGATGGTGGTGTCTACATTAAGTGGTC480CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGT
08VNAA8_T7_015_A11_10MAR2006_095 08VNAA8 Phaseolus vulgaris cDNA, mRNA sequence.
FD792851.1:30-49
ACAGATGGTGGTGTCTGCACTGAGTGGTC30CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv053A_M13R_D03.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682635.1:901-920
CACAGATGGTGGTGTCTGCACTGAGTGGTC901CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv036A_M13R_C06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682636.1:890-909
CACAGATGGTGGTGTCTGCACTGAGTGGTC890CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv022C_M13R_A05.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682637.1:842-861
CACAGATGGTGGTGTCTGCACTGAGTGGTC842CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv015D_M13R_F12.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682638.1:839-858
CACAGATGGTGGTGTCTGCACTGAGTGGTC839CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv034C_M13R_E08.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682640.1:806-825
CACAGATGGTGGTGTCTGCACTGAGTGGTC806CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv058A_M13R_A03.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682642.1:756-775
CACAGATGGTGGTGTCTGCACTGAGTGGTC756CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv017C_M13R_G11.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682643.1:745-764
CACAGATGGTGGTGTCTGCACTGAGTGGTC745CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv018B_M13R_H11.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682644.1:708-727
CACAGATGGTGGTGTCTGCACTGAGTGGTC708CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv045D_M13F_D11.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682646.1:681-700
CACAGATGGTGGTGTCTGCACTGAGTGGTC681CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv045D_M13R_D11.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682647.1:681-700
CACAGATGGTGGTGTCTGCACTGAGTGGTC681CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv018D_M13R_A09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682649.1:658-677
CACAGATGGTGGTGTCTGCACTGAGTGGTC658CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv006C_M13F_A09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682650.1:633-652
CACAGATGGTGGTGTCTGCACTGAGTGGTC633CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv006C_M13R_A09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682651.1:633-652
CACAGATGGTGGTGTCTGCACTGAGTGGTC633CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv034A_M13R_D12.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682656.1:492-511
CACAGATGGTGGTGTCTGCACTGAGTGGTC492CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv056D_M13F_D05.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682658.1:443-462
CACAGATGGTGGTGTCTGCACTGAGTGGTC443CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv056D_M13R_D05.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682659.1:443-462
CACAGATGGTGGTGTCTGCACTGAGTGGTC443CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv028A_M13R_H04.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682662.1:346-365
CACAGATGGTGGTGTTTGCACTGAGTGGTC346CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCAATCAAGGTGGAG
Pv044A_M13F_C10.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682663.1:306-325
CACAGATGGTGGTGTCTGCACTGAGTGGTC306CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv044A_M13R_C10.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682664.1:306-325
CACAGATGGTGGTGTCTGCACTGAGTGGTC306CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv028A_M13F_H04.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682665.1:270-289
CACAGATGGTGGTGTCTGCACTGAGTGGTC270CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv022C_M13F_C09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682666.1:265-284
CACAGATGGTGGTGTCTGCACTGAGTGGTC265CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv022C_M13R_C09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682667.1:265-284
CACAGATGGTGGTGTCTGCACTGAGTGGTC265CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv044A_M13F_A06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682668.1:246-265
CACAGATGGTGGTGTCTGCACTGAGTGGTC246CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv044A_M13R_A06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682669.1:246-265
CACAGATGGTGGTGTCTGCACTGAGTGGTC246CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv057A_M13F_C06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682671.1:154-173
CACAGATGGTGGTGTCTGCACTGAGTGGTC154CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Pv057A_M13R_C06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE682672.1:154-173
CACAGATGGTGGTGTCTGCACTGAGTGGTC154CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
vsu-ars_003208_LI10Contig_5009 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO778175.1:1387-1406
CACAGATGCTGGTGTCTGCACTGAGTGGTC1387CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
vsu-ars_020612_LI15contig_11833 VSU-ARS-L15 Phaseolus acutifolius cDNA, mRNA sequence.
HO795579.1:1292-1311
CACAGATGCTGGTGTCTGCACTGAGTGGTC1292CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Vigna angularis mRNA, clone: VES10D09.
HX945937.1:436-455
CACAGATGGTGGTGTCTGCATTGAGTGGTC436CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Vigna angularis mRNA, clone: VES17A06.
HX948501.1:506-525
CACAGATGGTGGTGTCTGCATTGAGTGGTC506CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
VUL084M24.R VUL Phaseolus vulgaris genomic 3', genomic survey sequence.
JY946644.1:108-127
TACAGATGGTGGTGTCTGCACTGAGTGGTC108CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Glycine max cDNA, clone: GMFL01-28-I01.
AK286442.1:1523-1542
CACAGATGGTGGTGTCTACATTAAGTGGTC1523CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGT
Lotus japonicus genomic DNA, chromosome 2, clone: LjT34H20, TM0134.
AP009654.1:30907-30926
TGCAGATGTTAGTGTCAACATTGAGTGGAC30907CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCGTTCGTGGTGGGT
Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
AP015044.1:17876391-17876410
TACAGATGGTGGTGTCTGCATTGAGTGGTC17876391CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:31964742-31964761
TGCAGATGTTAGTGTCAACATTGAGTGGAC31964742CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCGTTCGTGGTGGGT
Phaseolus vulgaris sucrose transport protein SUF1 mRNA, complete cds.
DQ221700.1:1464-1483
CACAGATGGTGGTGTCTGCACTGAGTGGTC1464CTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGG
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:22059918-22059937
TAACTATCAATCTTATTAGCTGGCTGATCG22059918CTTGGGATGCTTTGTTTGGTGCTTTTGGCTATTTGCCTTTTCCTTATGCT
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:134160538-134160557
TTCTTGGGCCTTTCTTGAGCTTGTTTGGGC134160538CTTGGGATGCTTTGTTTGGTGTTGCTTGAGCCTTGTGTCGGCCAAGACTA
Persicaria maculosa genome assembly, chromosome: 20.
OY998270.1:40321418-40321437
ATCATTGATCCAAATGAATAGGTTTTTTGC40321418CTTGGGATGCTTTGTTTGGTGTTATGTGATTAGTTTTTTTTGCTTACTCT
Lotus japonicus cDNA clone:MWM016g09_r, 5' end.
AV422680.1:381-400
ACCCACCACGAACGCCGGCAAGTTGCCACC381ACCAAACAAAGCATCCCAAGGTCCACTCAATGTTGACACTAACATCTGGG
Lotus japonicus cDNA clone:MWM137h11_f, 3' end.
AV766888.1:387-406
ACCCACCACGAACGCCGGCAAGTTGCCACC387ACCAAACAAAGCATCCCAAGGTCCACTCAATGTTGACACTAACATCTGGG
VUL023C14.R VUL Phaseolus vulgaris genomic 3', genomic survey sequence.
JY904185.1:611-630
CCCCACCATGAAAGCCGGCAAGTTGCCACC611ACCAAACAAAGCATCCCAAGGACCACTCAGTGCAGACCCCACCATCTGTA
VUL077K12.F VUL Phaseolus vulgaris genomic 5', genomic survey sequence.
JY926183.1:276-295
CCCCACCATGAAAGCCGGCAAGTTGCCACC276ACCAAACAAAGCATCCCAAGGACCACTCAGTGCAGACACCACCATCTGTA
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:33741701-33741720
ACCCACCATGAAAGCCGGCAAGTTGCCACC33741701ACCAAACAAAGCATCCCAAGGACCACTTAATGTAGACACCACCATCTGTA
Triticum monococcum genome assembly, chromosome: 3A.
OY737852.1:588592613-588592632
AGACCCCGGCAAGAGGAGCTTGCCGGGAAG588592613ACCAAACAAAGCATCCCAAGAGGCTTGCTGCGGCGCACTGCGCGCCCCGA
Gnaphalium uliginosum genome assembly, chromosome: 4.
OZ005683.1:45347792-45347811
TCTTTTTTAGAAAATTTCCTAAACTGGGCT45347792ACCAAACAAAGCATCCCAAGATAATGGTCTTTGAAGTTTTCTTGTTCTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGGGATGCTTTGTTTGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGGATGCTTTGTTTGGT | format : html | download : | debug :

0.008 | 0.008 | search_start;
2.853 | 2.845 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGGATGCTTTGTTTGGT&k=0&no_gap=0&offset=0&limit=50
3.092 | 0.239 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAAACAAAGCATCCCAAG&k=0&no_gap=0&offset=0&limit=2
3.097 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).