GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 20:40:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 19454 from patent US 7750207.
GX325379.1:82-101
CTTCTCTCCTGCAAAATGTTCAGATCCGCG82CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Sequence 45252 from patent US 8952217.
HK443066.1:16-35
ATGTTCAGATCCGCG16CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Sequence 46028 from patent US 8952217.
HK443449.1:16-35
ATGTTCAGATCCGCG16CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Sequence 70181 from patent US 8952217.
HK455371.1:60-79
CTTCTCTCCTGCAAAATGTTCAGATCCGCG60CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Sequence 70301 from patent US 8952217.
HK455431.1:60-79
CTTCTCTCCTGCAAAATGTTCAGATCCGCG60CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
E1745 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E1745, mRNA sequence.
BG543994.1:63-82
TTCTCTCCTTGCAAAATGTTCAGATCCGCG63CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
24RDBNH_UP_001_B02_18DEC2003_014 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN729794.1:80-99
CTTCTCTCCTGCAAAATGTTCAGATCCGCG80CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
26RDBNT_UP_026_H03_22JAN2004_017 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN737427.1:83-102
TTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
SS0105.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS0105.txt 5', mRNA sequence.
CV544454.1:71-90
TTCTCTCCTTGCAAAATGTTCAGATCCGCG71CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
38RDBRM_UP_035_E02_13JUL2004_008 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX268493.1:93-112
TTCTCTCCTTGCAAAATGTTCAGATCCGCG93CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCACCGCAGCTT
39RDBRT_UP_006_F04_02APR2004_022 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX270116.1:93-112
TTCTCTCCTTGCAAAATGTTCAGATCCGCG93CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Brassica rapa subsp. pekinensis mRNA, clone: BRest01-O18, 5'-end sequence.
DC844251.1:71-90
TTCTCTCCTTGCAAAATGTTCAGATCCGCG71CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
Brassica oleracea var. viridis mRNA, clone: KALE-102F21, 5' end sequence.
DK494702.1:53-72
TTCTCTCCTTGCAAAATGTTCAGATCCGCG53CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Brassica oleracea var. viridis mRNA, clone: KALE-147B23, 5' end sequence.
DK511801.1:62-81
TTCTCTCCTTGCAAAATGTTCAGATCCGCG62CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
54ACDHPE_UP_024_C02_09NOV2004_012 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY003187.1:74-93
TTCTCTCCTTGCAAAATGTACAGATCCATG74CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
40JKME7D_UP_003_E01_25MAR2004_007 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY012181.1:9-28
GATCCATG9CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
48RDOAM_UP_004_C07_12AUG2004_059 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY013886.1:56-75
TTCTCTCCTTGCAAAATGTTCAGATCCGCG56CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
53COT5_T3_007_E10_19JUL2004_072 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020553.1:23-42
CGGCACGAGGTACCGATCCATG23CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
63JKCOT5_T3_037_E02_25JAN2005_008 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY023119.1:53-72
TTCTCTCCTTGCAAAATGTACAGATCCATG53CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
47RDOAH_UP_003_A12_27JUL2004_096 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY025817.1:56-75
TTCTCTCCATGCAAAATGTTCAGATCCGCG56CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
47RDOAH_UP_014_H06_11AUG2004_034 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY026863.1:22-41
GGCAAAATGTTCAGATCCGCG22CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
47RDOAH_UP_018_D02_11AUG2004_010 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY027171.1:56-75
TTCTCTCCTTGCAAAATGTTCAGATCCGCG56CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
56ACAC48_UP_001_D01_30AUG2004_009 Brassica napus Brassica napus cDNA 5', mRNA sequence.
EE412292.1:83-102
TTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
58ACPE48_UP_015_B11_21SEP2004_093 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE418201.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
67ETGS_T3_002_H03_15JAN2004_017 germinating seed library 67ETGS Brassica napus cDNA 5', mRNA sequence.
EE439278.1:119-138
CTTCTCTCCTGCAAAATGTTCAGATCCGCG119CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTTTCCGCCGCAGCTT
72ETGS24_UP_011_F06_20MAY2005_038 72ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE443818.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
73ETGS36_UP_006_E01_19MAY2005_007 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE445162.1:75-94
TTCTCTCCTTGCAAAATGTACAGATCCATG75CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
73ETGS36_UP_009_C09_20MAY2005_075 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE445396.1:82-101
CTTCTCTCCTGCAAAATGTTCAGATCCGCG82CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
BNYS4DCT_UP_008_D06_20MAR2005_042 Brassica napus seeds BNYS4DCT Brassica napus cDNA 5', mRNA sequence.
EE476689.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
DHBN6DCT_UP_024_H02_18FEB2005_002 BRASSICA NAPUS SEEDS BNDH6DCT Brassica napus cDNA 5', mRNA sequence.
EE484310.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
26RDBNT_UP_071_E01_14NOV2005_007 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
EE515852.1:43-62
TTCTCTCCTTGCAAAATGTACAGATCCATG43CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
36RDBRG_UP_070_C11_29NOV2005_091 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE521756.1:86-105
TTCTCTCCTTGCAAAATGTTCAGATCCGCG86CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
37RDBRH_UP_007_F05_26MAR2004_037 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE522728.1:92-111
TTCTCTCCTTGCAAAATGTTCAGATCCGCG92CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
37RDBRH_UP_056_B10_05DEC2005_078 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE526434.1:85-104
TTCTCTCCTTGCAAAATGTTCAGATCCGCG85CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
39RDBRT_UP_073_F10_01DEC2005_070 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
EE530194.1:93-112
TTCTCTCCTTGCAAAATGTTCAGATCCGCG93CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
BNZB_UP_093_F07_05JUN2004_053 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE563308.1:56-75
CTTCTCTCCTGCAAAATGTTCAGATCCGCG56CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
65JKBNM0_T3_009_C12_16MAR2005_092 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587431.1:58-77
TTCTCTCCTTGCAAAATGTACAGATCCATG58CTTGTCCGATCCTCCGCCTCCGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
EST5509 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B257C011, mRNA sequence.
EL628001.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
60ACAB48R_UP_030_E08_22OCT2004_056 Brassica napus 60ACAB48 Brassica napus cDNA 5', mRNA sequence.
ES899040.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
36RDBRG_UP_099_D08_20JAN2006_058 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931071.1:83-102
TTCTCTCCTTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
46RDOAG_UP_055_H01_01FEB2006_001 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES937822.1:53-72
TTCTCTCCTTGCAAAATGTTCAGATCCGCG53CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
49RDOAT_UP_051_H12_27JAN2006_082 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
ES947473.1:53-72
TTCTCTCCTTGCAAAATGTTCAGATCCGCG53CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
9RDBNGA_UP_196_B07_14SEP2006_061 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES959817.1:56-75
CTTCTCTCCTGCAAAATGTTCAGATCCGCG56CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCTGCAGCTT
40JKME7D_UP_061_B05_19JUNE2006_045 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES982446.1:77-96
TTCTCTCCTTGCAAAATGTACAGATCCATG77CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
BNAEN3GH_UP_031_C09_01SEP2006_075 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994943.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
BNAEN3GH_UP_127_H08_10NV2006_050 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV003195.1:61-80
CTTCTCTCCTGCAAAATGTTCAGATCCGCG61CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
BNSCS2CT_UP_238_B04_03MAY2007_030 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV033114.1:83-102
CTTCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
BNSCS3CT_UP_106_D02_05MAY2007_010 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV044944.1:71-90
TTCTCTCCTTGCAAAATGTACAGATCCATG71CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
BNSCS3CT_UP_169_H08_12MAY2007_050 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV050225.1:71-90
TTCTCTCCTTGCAAAATGTACAGATCCATG71CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
BNSCS4CT_UP_102_D06_18MAY2007_042 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV066231.1:75-94
TTCTCTCCTTGCAAAATGTACAGATCCATG75CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
BNSCS4CT_UP_143_H01_20MAY2007_001 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV069448.1:61-80
CTTCTCTCCTGCAAAATGTTCAGATCCGCG61CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
0178414 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV098910.1:123-142
CTTCTCTCCTGCAAAATGTTCAGATCCGCG123CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
0119762 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV114450.1:172-191
TTCTCTCCTTGCAAAATGTACAGATCCATG172CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
0120413 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115101.1:121-140
CTTCTCTCCTGCAAAATGTTCAGATCCGCG121CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCACTTCTCCGCCGCAGCTT
0129166 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV123854.1:83-102
CCGCTCTCCTGCAAAATGTTCAGATCCGCG83CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3180.
FX662070.1:160-179
CCCTCCCCACCAAAAATGTTCAGATCTATG160CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGGCTCTCCGCCGCGGCTT
Zea mays clone 10058 mRNA sequence.
DQ244689.1:69-88
TTCTCTCCTTGCAAAATGTACAGATCCATG69CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCCCTTCTCCGCCGCAGCTT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:1122173-1122192
CTTCTCTCCTGCAAAATGTTCAGATCTATG1122173CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Brassica rapa genome, scaffold: A08.
LR031575.1:1176247-1176266
CTTCTCTCCTGCAAAATGTTCAGATCCGCG1176247CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:1270859-1270878
CCCTCCCCACCAAAAATGTTCAGATCCATG1270859CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGGCTCTCCGCCGCGGCTT
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:1194469-1194488
CTTCTCTCCTGCAAAATGTTCAGATCCGCG1194469CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT
B.napus mRNA for mitochondrial malate dehydrogenase.
X89451.1:54-73
TTCTCTCCTGCCCAAATGTTCAGATCCGCG54CTTGTCCGATCCTCCGCCTCGGCGAAGCAGTCGCTTCTCCGCCGCAGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGTCCGATCCTCCGCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTCCGATCCTCCGCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.087 | 3.078 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTCCGATCCTCCGCCTC&k=0&no_gap=0&offset=0&limit=50
3.239 | 0.152 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGCGGAGGATCGGACAAG&k=0&no_gap=0&offset=0&limit=0
3.239 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).