GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:11:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

WS0291.BR_N14 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0291_N14 3, mRNA sequence.
DR488737.1:693-712
TTTGATCTCGTTCGCCATGGCCGGGTTCCC693CTTGTCGAAGTGGATCAGCAGACTGCATGATTTCTCCATTTTGTTTGGCC
TSA: Musa acuminata AAA Group Unigene89997_NK1 mRNA sequence.
JV450919.1:220-239
CTTGATCTCGTTCGCCATCGCCGGCGAGCC220CTTGTCGAAGTGGATCAGCAGCGAGCATGACTTCTCCATCTCGTCCACCA
TSA: Costus pictus Locus_12614_Transcript_1/4.Copileaf mRNA sequence.
JW218515.1:3005-3024
CTTGATCTCGTTGGCCATGGCCGGGGAGCC3005CTTGTCGAAGTGGATCAGCAGCGAGCATGATTTCTCCATCTTGTCGAAGT
TSA: Costus pictus Locus_12614_Transcript_2/4.Copileaf mRNA sequence.
JW218516.1:3108-3127
CTTGATCTCGTTGGCCATGGCCGGGGAGCC3108CTTGTCGAAGTGGATCAGCAGCGAGCATGATTTCTCCATCTTGTCGAAGT
TSA: Costus pictus Locus_12614_Transcript_4/4.Copileaf mRNA sequence.
JW218518.1:3002-3021
CTTGATCTCGTTGGCCATGGCCGGGGAGCC3002CTTGTCGAAGTGGATCAGCAGCGAGCATGATTTCTCCATCTTGTCGAAGT
Musa troglodytarum cultivar karat chromosome 7.
CP097509.1:39395322-39395341
CTTGATCTCGTTCGCCATGGCCGGCGAGCC39395322CTTGTCGAAGTGGATCAGCAGCGAGCATGACTTCTCCATCTCGGCCACCT
WS0291.B21_N14 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0291_N14 5, mRNA sequence.
DR496403.1:182-201
GGCCAAACAAAATGGAGAAATCATGCAGTC182TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
WS02750.C21_E10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02750_E10 5, mRNA sequence.
DR536829.1:178-197
GGCCAAACAAAATGGAGAAATCATGCAGTC178TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
Pinus sylvestris EST, clone WZ0APSBB7YF23FM1.
HE635140.1:188-207
AGCCAAACAAAATGGAGAAATCATGCAGTC188TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
Pinus sylvestris EST, clone WZ0APSBC1YG10FM1.
HE636665.1:127-146
TGTCAAACAAAATGGAGAAATCCTGTAGTC127TGCTGATCCACTTCGACAAGGGGAATCCGGCCATGGTGAACGAGATTAAA
TSA: Larix kaempferi PEMC21673.Lakaproemb mRNA sequence.
JR152069.1:320-339
TGCCAAACAAAATGGAGAAATCATGCAGTC320TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
TSA: Musa acuminata AAA Group Unigene82489_B1 mRNA sequence.
JV350701.1:268-287
TGGTGGACGAGATGGAGAAGTCATGCTCGC268TGCTGATCCACTTCGACAAGGGCTCGCCGGCGATGGCGAACGAGATCAAG
TSA: Musa acuminata AAA Group Unigene87828_B1 mRNA sequence.
JV374603.1:207-226
AGCGTTACGAGATGGAGAAGTCGTGCTCGC207TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
TSA: Musa acuminata AAA Group Unigene97826_NK1 mRNA sequence.
JV431233.1:207-226
AGCGTTACGAGATGGAGAAGTCGTGCTCGC207TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
TSA: Curcuma longa 402_Transcript_1/3_Confidence_0.714_Length_3336_45_A mRNA sequence.
JW758540.1:234-253
TCGGTGCGAAGATGGAGAAGTCGTGTTCGA234TGCTGATCCACTTCGACAAGGGATCTCCGGCTATGGCGAACGAGATCAAG
Picea sitchensis clone WS02750_E10 unknown mRNA.
BT070792.1:178-197
GGCCAAACAAAATGGAGAAATCATGCAGTC178TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:12211219-12211238
AGGTGGACGAGATGGAGAAGTCATGCTCGC12211219TGCTGATCCACTTCGACAAGGGCTCGCCGGCGATGGCGAACGAGATCAAG
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36487916-36487935
GGCGTTACGAGATGGAGAAGTCGTGCTCGC36487916TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:12173886-12173905
TGGTGGACGAGATGGAGAAGTCATGCTCGC12173886TGCTGATCCACTTCGACAAGGGCTCGCCGGCGATGGCGAACGAGATCAAG
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40209259-40209278
GGCGTTACGAGATGGAGAAGTCGTGCTCGC40209259TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
Picea sitchensis clone WS0291_N14 unknown mRNA.
EF084815.1:182-201
GGCCAAACAAAATGGAGAAATCATGCAGTC182TGCTGATCCACTTCGACAAGGGGAACCCGGCCATGGCGAACGAGATCAAA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:12106966-12106985
AGGTGGACGAGATGGAGAAGTCATGCTCGC12106966TGCTGATCCACTTCGACAAGGGCTCGCCGGCGATGGCGAACGAGATCAAG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:33736459-33736478
AGCGTTACGAGATGGAGAAGTCGTGCTCGC33736459TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:13149330-13149349
TGGTGTACGGGATGGAGAAGTCATGCTCGC13149330TGCTGATCCACTTCGACAAGGGCTCGCCGGCGATGGCGAACGAGATCAAG
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:37621350-37621369
GGCGTTACGAGATGGAGAAGTCGTGCTCGC37621350TGCTGATCCACTTCGACAAGGGCTCGCCGGCCATGGCGAACGAGATCAAG
Coccinella septempunctata genome assembly, chromosome: 2.
OU015574.1:8021865-8021884
ATGCAGAAGAAGAACAAAGAAGATAGTGGA8021865TGCTGATCCACTTCGACAAGAAGCGCGGGGAAATCTACGAACCCCAAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGTCGAAGTGGATCAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTCGAAGTGGATCAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.271 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTCGAAGTGGATCAGCA&k=0&no_gap=0&offset=0&limit=50
0.713 | 0.434 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGATCCACTTCGACAAG&k=0&no_gap=0&offset=0&limit=44
0.726 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).