GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:24:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3AY73JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV545953.1:715-736
TAACTCCGATTATACCATCTTCATCTTCTT715CTTGTGTTGCACACTCAAAGGACCTATCATCTGATCCGGTATGGATCCTTAC
RS2C753JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900443.1:567-588
TAACTCCGATTATACCATCTTCATCTTCTT567CTTGTGTTGCACACTCAAAGGACCTATCATCTGATCCGGTATGGATCCTTAC
TSA: Pachycladon cheesemanii 72239_1459_18043_5_41.Pachleaf mRNA sequence.
JP989790.1:588-609
TAACTCCAATTATGCCATCTTCATCTTCTT588CTTGTGTTGCACACTCAAAGGACCTATCATCTGATCCGGTATGGATCCGTAC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:27833098-27833119
TAACTCCGATTATACCATCTTCATCTTCTT27833098CTTGTGTTGCACACTCAAAGGACCTATCATCTGATCCGGTATGGATCCTTAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:27833098-27833119
TAACTCCGATTATACCATCTTCATCTTCTT27833098CTTGTGTTGCACACTCAAAGGACCTATCATCTGATCCGGTATGGATCCTTAC
RR3AY73TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550714.1:287-308
GTAAGGATCCATACCGGATCAGATGATAGG287TCCTTTGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATCGGAGTTA
RS2C753TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896523.1:584-605
GTAAGGATCCATACCGGATCAGATGATAGG584TCCTTTGAGTGTGCAACACAAGA
Cardamine chenopodiifolia genome assembly, chromosome: 19.
OZ000477.1:16068242-16068263
GTAAGGATCCATACCGGAGCGGATGATAGG16068242TCCTTTGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATTGGAGTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGTGTTGCACACTCAAAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTGTTGCACACTCAAAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.232 | 0.224 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTGTTGCACACTCAAAGGA&k=0&no_gap=0&offset=0&limit=50
0.367 | 0.134 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTTTGAGTGTGCAACACAAG&k=0&no_gap=0&offset=0&limit=45
0.369 | 0.002 | cgi_end;

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