GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:56:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CHWL3867.b1_E07.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL3867, mRNA sequence.
EE608474.1:110-129
ATCTTTTCGATTTCTGTTTCTCGCAGTTTC110CTTGTTCATCGGCTTGTGTGTTTCAGTTCGGTTGCTTGAATTCACCGTAT
CHEL11685.b1_J17.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEL11685, mRNA sequence.
EE629127.1:258-277
ATCTTTTCGATTTCTGTTTCTCGCAGTTTC258CTTGTTCATCGGCTTGTGTGTTTCAGTTCGGTTGCTTGAATTCACCGTAT
CCFS5667.b1_F02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS5667, mRNA sequence.
GE492592.1:253-272
ATCTTTTCGATTTCTGTTCCTCGCAGTTTC253CTTGTTCATCGGCTTGTGTGTTTCTGTTCGGTTGCTTGAATTCACCGTAT
CCFS963.b1_E02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS963, mRNA sequence.
GE497959.1:387-406
ATCTTTTCGATTTCTGTTTCTCGCAGTTTC387CTTGTTCATCGGCTTGTGTGTTTCTGTTCGGTTGCTTGAATTCACCGTAT
CCFT9261.b1_I11.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT9261, mRNA sequence.
GE514071.1:272-291
ATCTTTTCGATTTCTGTTTCTCGCAGTTTC272CTTGTTCATCGGCTTGTGTGTTTCTGTTCGTTGCTTGAATTCACCGTATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2444438-2444457
GGGTTTCACCAATAGTATTGACATTGTTTA2444438CTTGTTCATCGGCTTGTGTGATTATTTGTATTTGTAACTTACAAAACAAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2402753-2402772
GGGTTTCACCAATAGTATTGGCATTGTTTA2402753CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2490457-2490476
GGGTTTCACCAATAGTATTGACATTGTTTA2490457CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACGAAACAAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2422434-2422453
GGGTTTCACCAATAGTATTGGCATTGTTTA2422434CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2469118-2469137
GGGTTTCACCAATAGTATTGACATTGTTTA2469118CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2558072-2558091
GGGTTTCACCAATAGTATTGGCATTGTTTA2558072CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2550284-2550303
GGGTTTCACCAATAGTATTGGCATTGTTTA2550284CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2641600-2641619
GGGTTTCACCAATAGTATTGGCATTGTTTA2641600CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2617041-2617060
GGGTTTCACCAATAGTATTGACATTGTTTA2617041CTTGTTCATCGGCTTGTGTGATTATTTGTATTTTTAACTTACAAAACAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38693081-38693100
GTTGTTTTGTAAGTTAAAAATACAAATAAT38693081CACACAAGCCGATGAACAAGTAAACAATGTCAATACTATTGGTGAAACCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGTTCATCGGCTTGTGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTTCATCGGCTTGTGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.412 | 0.403 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTTCATCGGCTTGTGTG&k=0&no_gap=0&offset=0&limit=50
0.437 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CACACAAGCCGATGAACAAG&k=0&no_gap=0&offset=0&limit=36
0.438 | 0.001 | cgi_end;

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