GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:58:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus var. napus clone Bna.FRI_chrC03_8149430_25629-3, genomic survey sequence.
KM388090.1:2240-2260
ATCATCGCCGATGAAGGTTGCTCCTCCTCC2240CTTGTTGATGGACGATGTGCGTAGCCGTTACGGACGGCCATGGGGATTGCG
Brassica napus var. napus clone Bna.FRI_chrC03_8149430_Campino, genomic survey sequence.
KM388091.1:2185-2205
ATCATCGCCGATGAAGGTTGCTCCTCCTCC2185CTTGTTGATGGACGATGTGCGTAGCCGTTACGGACGGCCATGGGGATTGCG
Brassica napus subsp. rapifera clone Bna.FRI_chrC03_8149430_MagresPajberg, genomic survey sequence.
KM388092.1:2232-2252
ATCATCGCCGATGAAGGTTGCTCCTCCTCC2232CTTGTTGATGGACGATGTGCGTAGCCGTTACGGACGGCCATGGGGATTGCG
Brassica napus var. napus clone Bna.FRI_chrC03_8149430_Silona, genomic survey sequence.
KM388093.1:2240-2260
ATCATCGCCGATGAAGGTTGCTCCTCCTCC2240CTTGTTGATGGACGATGTGCGTAGCCGTTACGGACGGCCATGGGGATTGCG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:9468600-9468620
ATCATCGCCGATGAAGGTTGCTCCTCCTCC9468600CTTGTTGATGGACGATGTGCGTAGCCGTTACGGACGGCCATGGGGATTGCG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:9417894-9417914
ATCATCGCCGATGAAGGTTGCTCCTCCTCC9417894CTTGTTGATGGACGATGTGCGTAGCCATTACGGACGGCCATGGGAATTGCG
BNAPO2GH_T3_015_F10_19JUN2007_070 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454231.1:15-35
GTCCGTAACGGCTA15CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
BOHBH16TF BOHB Brassica oleracea genomic clone BOHBH16, genomic survey sequence.
BH491265.1:578-598
CGCAATCCCCATGGCCGTCCGTAACGGCTA578CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:69823942-69823962
CGCAATCCCCATGGCCGTCCGTAACGGCTA69823942CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica oleracea var. italica isolate E8 FRIGIDA gene, complete cds.
JN191392.1:21-41
ATGGCCGTCCGTAACGGCTA21CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica oleracea var. italica isolate E1 FRIGIDA gene, complete cds.
JN191393.1:21-41
ATGGCCGTCCGTAACGGCTA21CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica oleracea var. alboglabra isolate A12 FRIGIDA-a gene, complete cds.
JN191450.1:21-41
ATGGCCGTCCGTAACGGCTA21CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica oleracea var. acephala cultivar Frosty FRIGIDA-like protein (FRI) gene, FRI.a-1 allele, complete cds.
JN882594.1:27-47
ATTCCCATGGCCTTCCGTAACGGCTA27CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica napus isolate BnaX.FRI.d FRIGIDA-like protein gene, complete cds.
JN936853.1:395-415
CGCAATCCCCATGGCCGTCCGTAACGGCTA395CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica oleracea var. alboglabra cultivar A12DH FRIGIDA-like protein (FRI) gene, FRI-a-2 allele, complete cds.
JN989363.1:28-48
ATCCCCAATGGCCGTCCGTAACGGCTA28CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT
Brassica carinata cultivar Gommenzer (Amharic) FRIGIDA-like protein (FRI.a) gene, FRI.a-1 allele, complete cds.
KF896287.1:28-48
ATCCCCAATGGCCGTCCGTAACGGCTA28CGCACATCGTCCATCAACAAGGGAGGAGGAGCAACCTTCATCGGCGATGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGTTGATGGACGATGTGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTTGATGGACGATGTGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.298 | 0.289 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTTGATGGACGATGTGCG&k=0&no_gap=0&offset=0&limit=50
0.435 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=CGCACATCGTCCATCAACAAG&k=0&no_gap=0&offset=0&limit=44
0.442 | 0.007 | cgi_end;

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