GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:08:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pipistrellus pipistrellus genome assembly, chromosome: 8.
LR862364.1:33998022-33998041
TCTTTTCTCTCTGATTACTTCTAAGATTTT33998022CTTGTTGCCTTTGAGGTTCCAAAATTTGTGCCTTTATATCTTTCATCAAT
Microcos paniculata chromosome 6a.
CP131461.1:22488328-22488347
TCTCTAAGTCTCTCTTGACGAGATTACCCT22488328CTTGTTGCCTTTGAGGTTCCATACTTCTTACTCTTCTCAGGAGTTCCTCT
Pipistrellus pygmaeus genome assembly, chromosome: 8.
OX465310.1:49761684-49761703
ATTGATGAAAAATATAAAGGCACAAATTTC49761684GGAACCTCAAAGGCAACAAGAAAATCTTAGAAGTAATCAGAGAGAAAAGA
Pipistrellus nathusii genome assembly, chromosome: 8.
OY882865.1:49560021-49560040
ATTGATGAAAGATATAAAGGCACAAATTTT49560021GGAACCTCAAAGGCAACAAGAAAATCTTAGAAGTAATCAGAGAGAAAAGA
Pipistrellus nathusii genome assembly, chromosome: 8.
OY883185.1:49544879-49544898
ATTGATGAAAGATATAAAGGCACAAATTTT49544879GGAACCTCAAAGGCAACAAGAAAATCTTAGAAGTAATCAGAGAGAAAAGA
Porphyra yezoensis cDNA, clone:PF007c12_r, 5'end.
AU187032.1:3-22
GC3GGAACCTCAAAGGCAACAAGGCGGCGCCGGCTGGCGCGCTCGGCACCCAC
Porphyra yezoensis cDNA, clone:PFL077b02_r, 5'end.
AU195574.1:102-121
TCGGCGGCGGCGGGAGCAGTAGCCGTGGGC102GGAACCTCAAAGGCAACAAGGCGGCGCCGGCTGGCGCGCTCGGCACCCAC
Porphyra yezoensis cDNA clone:PL008b11_r, 5' end.
AV429766.1:437-456
TCGGCGGCGGCGGGAGCAGTAGCCGTGGGC437GGAACCTCAAAGGCAACAAGGCGGCGCCGGCTGGCGCGCTCGGCACCCAC
Porphyra yezoensis cDNA clone:PL009g06_r, 5' end.
AV429875.1:7-26
GTGGGC7GGAACCTCAAAGGCAACAAGGCGGCGCCGGCTGGCGCGCTCGGCACCCAC
Amaurobius ferox genome assembly, chromosome: X3.
OX578142.1:106435460-106435479
TCTGCGGGGGGGGGGGGGGGGGGGAGAAAT106435460GGAACCTCAAAGGCAACAAGTTATCGAATATAATTTTCACTAACTACTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGTTGCCTTTGAGGTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGTTGCCTTTGAGGTTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.098 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTTGCCTTTGAGGTTCC&k=0&no_gap=0&offset=0&limit=50
0.134 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GGAACCTCAAAGGCAACAAG&k=0&no_gap=0&offset=0&limit=48
0.139 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).