GGGenome | Results

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2025-04-09 10:37:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 18350 from patent US 7557201.
GP487353.1:303-322

TAAGGTTGAGAGGCGGAATTATTGAGCCTT303CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11472 from patent US 10766935.
MV654867.1:271-290

TGAGGCTTAGAGGAGGAATCATTGAGCCTT271CTTTAATGGCTTTGGCTCGTAAGTACAACCAAGACAAGATGATTTGCCGC

Sequence 11517 from patent US 10766935.
MV654912.1:285-304

TGAGGCTTAGAGGAGGTATCATTGAGCCAT285CTTTAATGGCTTTGGCTCGTAAATACAATCAAGATAAGATGATCTGCCGC

Sequence 11530 from patent US 10766935.
MV654925.1:304-323

TAAGGTTGAGAGGTGGAATTATTGAGCCTT304CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11567 from patent US 10766935.
MV654962.1:309-328

TAAGGTTGAGAGGTGGAATTATTGAGCCTT309CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11719 from patent US 10766935.
MV655114.1:299-318

TAAGGTTGAGAGGCGGAATTATTGAGCCTT299CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11472 from patent US 11566053.
OS278346.1:271-290

TGAGGCTTAGAGGAGGAATCATTGAGCCTT271CTTTAATGGCTTTGGCTCGTAAGTACAACCAAGACAAGATGATTTGCCGC

Sequence 11517 from patent US 11566053.
OS278391.1:285-304

TGAGGCTTAGAGGAGGTATCATTGAGCCAT285CTTTAATGGCTTTGGCTCGTAAATACAATCAAGATAAGATGATCTGCCGC

Sequence 11530 from patent US 11566053.
OS278404.1:304-323

TAAGGTTGAGAGGTGGAATTATTGAGCCTT304CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11567 from patent US 11566053.
OS278441.1:309-328

TAAGGTTGAGAGGTGGAATTATTGAGCCTT309CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Sequence 11719 from patent US 11566053.
OS278593.1:299-318

TAAGGTTGAGAGGCGGAATTATTGAGCCTT299CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

GA__Eb0032N14f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032N14f, mRNA sequence.
BF278494.1:140-159

TAAGGATGAGAGGCGGAATTATTGAGCCTT140CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

GA__Ed0061C11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0061C11f, mRNA sequence.
BQ403704.1:140-159

TAAGGTTGAGAGGCGGAATTATTGAGCCTT140CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

GR__Ea17M02.r GR__Ea Gossypium raimondii cDNA clone GR__Ea17M02 3', mRNA sequence.
CO095224.1:300-319

TAAGGTTGAGAGGTGGAATTATTGAGCCTT300CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

UFL_612_20 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES794608.1:253-272

TAAGGTTGAGAGGTGGAATTATTGAGCCTT253CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

UFL_641_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES806396.1:296-315

TAAGGTTGAGAGGTGGAATTATTGAGCCTT296CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

UFL_192_88 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES813122.1:255-274

TAAGGTTGAGAGGTGGAATTATTGAGCCTT255CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

UFL_298_82 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES814233.1:213-232

TAAGGTTGAGAGGCGGAATTATTGAGCCTT213CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

UFL_351_37 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES821013.1:236-255

TAAGGTTGAGAGGCGGAATTATTGAGCCTT236CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

h11_03ju_2g.s 03ju Brassica juncea cDNA clone h11_03ju_2g 5, mRNA sequence.
GT072598.1:253-272

TGAGGCTTAGAGGAGGAATCATTGAGCCTT253CTTTAATGGCTTTGGCTCGTAAGTACAACCAAGACAAGATGATTTGCCGC

1P16-17-G3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454234.1:38-57

TAAGGTTGAGAGGTGGAATTATTGAGCCTT38CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

B12-109B12 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK792950.1:315-334

TAAGGTTGAGAGGTGGAATTATTGAGCCTT315CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

D01-060D1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794168.1:315-334

TAAGGTTGAGAGGTGGAATTATTGAGCCTT315CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

B09-35B09 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796204.1:313-332

TAAGGTTGAGAGGCGGAATTATTGAGCCTT313CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

G11-088G11 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796230.1:313-332

TAAGGTTGAGAGGCGGAATTATTGAGCCTT313CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

B02-GC7602 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805915.1:265-284

TAAGGTTGAGAGGTGGAATTATTGAGCCTT265CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

A06-GC4646 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805961.1:265-284

TAAGGTTGAGAGGTGGAATTATTGAGCCTT265CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium hirsutum cultivar TM1 chromosome A11.
CP023743.1:61557999-61558018

TCAGGTTGAGAGGTGGAATTATTGAGCCTT61557999CTTTAATGGCTTTGGCTCGTAAATTCAACCAAGACAAAATGATTTGCCGC

Gossypium hirsutum cultivar TM1 chromosome A11.
CP023743.1:61579044-61579063

TAAGGTTGAGAGGCGGAATTATTGAGCCTT61579044CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypioides kirkii chromosome KI_11.
CP032253.1:54824254-54824273

TAAGGTTGAGAGGTGGAATTATTGAGCCTT54824254CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium turneri isolate D10-2 chromosome D10_11.
CP032581.1:66802708-66802727

TAAGGTTGAGAGGTGGAATTATTGAGCCTT66802708CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:104268879-104268898

TGAGGTTGAGAGGTGGAATCATTGAGCCTT104268879CTTTAATGGCTTTGGCTCGTAAATCCAACCAAGACAAAATGATAGTGTTG

Gossypium herbaceum isolate GPA1alz chromosome 11.
CP106704.1:125950956-125950975

TAAGGTTGAGAGGTGGAATTATTGAGCCTT125950956CTTTAATGGCTTTGGCTCGTAAATTCAACCAAGACAAAATGATTTGCCGC

Gossypium herbaceum isolate GPA1alz chromosome 11.
CP106704.1:125971916-125971935

TAAGGTTGAGAGGCGGAATTATTGAGCCTT125971916CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:135669508-135669527

TAAGGTTGAGAGGTGGAATTATTGAGCCTT135669508CTTTAATGGCTTTGGCTCGTAAACACAACCAAGACAAAATGATTTGTCGC

Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:135703523-135703542

TAAGGTTGAGAGGTGGATTTATTGAGCCTT135703523CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:135715748-135715767

TAAGGCTGAGAGGTGGAATTATTGAGCCTT135715748CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:161629698-161629717

TAAGGTTGAGAGGTGGAATCATTGAGCCTT161629698CTTTAATGGCTTTGGCTCGTAAATCCAACTAAGACAAAATGATAGTTTTG

Hibiscus tridactylites genome assembly, chromosome: 3.
OY288267.1:23453194-23453213

TGAGGTTGAGAGGTGGAATTATTGAGCCTT23453194CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Hibiscus tridactylites genome assembly, chromosome: 7.
OY288271.1:22515647-22515666

TGAGGTTGAGAGGTGGAATTATTGAGCCTT22515647CTTTAATGGCTTTGGCTCGTAAATACAACCAAGACAAAATGATTTGCCGC

Cardamine chenopodiifolia genome assembly, chromosome: 21.
OZ000479.1:13311398-13311417

TGAGGCTCAGAGGAGGTATCATTGAGCCTT13311398CTTTAATGGCTTTGGCTCGTAAGTACAACCAAGACAAGATGATTTGCCGC

Erithacus rubecula genome assembly, chromosome: 10.
LR812113.1:23807025-23807044

CTTGTTTTGTGGGATACTTGCTGCTGTGAC23807025ACGAGCCAAAGCCATTAAAGGCTAGAAAGAGAGGAGGAAGTAAAAGCTTT

Cinclus cinclus genome assembly, chromosome: 8.
OY759685.1:5288453-5288472

CTTGTTTTGTGGGATACTTGCTGCTGTAAC5288453ACGAGCCAAAGCCATTAAAGGCTAGAAAGAGAGGAAGAAATAAAAGCTTT

rayctn0_0071_E09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO094638.1:324-343

GCGGCAAATCATTTTGTCTTGGTTGTATTT324ACGAGCCAAAGCCATTAAAGAAGGCTCAATAATTCCACCTCTCAACCTTA

Gossypium raimondii isolate D5-4 chromosome D5_11.
CP032563.1:966704-966723

GCGGCAAATCATTTTGTCTTGGTTGTATTT966704ACGAGCCAAAGCCATTAAAGAAGGCTCAATAATTCCACCTCTCAACCTTA

Gossypium herbaceum isolate Zhongcao1 chromosome 11.
CP106686.1:1223856-1223875

GCGGCAAATCATTTTGTCTTGGTTGTATTT1223856ACGAGCCAAAGCCATTAAAGAAGGCTCAATAATTCCGCCTCTCAACCTTA

Gossypium herbaceum isolate Zhongcao1 chromosome 11.
CP106686.1:1244821-1244840

GCGGCAAATCATTTTGTCTTGGTTGAATTT1244821ACGAGCCAAAGCCATTAAAGAAGGCTCAATAATTCCACCTCTCAACCTTA

Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:21390425-21390444

CAACACTATCATTTTGTCTTGGTTGGATTT21390425ACGAGCCAAAGCCATTAAAGAAGGCTCAATGATTCCACCTCTCAACCTCA

Camelina sativa cultivar CO46 chromosome 8.
CP131557.1:27385675-27385694

AAAAAAAAAAGCTAACTTGCGACATATCTT27385675ACGAGCCAAAGCCATTAAAGAAGGCTCAATGATACCTTCTCTAAGCCTCA

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
1.683 | 1.675 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTAATGGCTTTGGCTCGT&k=0&no_gap=0&offset=0&limit=50
1.832 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAGCCAAAGCCATTAAAG&k=0&no_gap=0&offset=0&limit=9
1.837 | 0.005 | cgi_end;

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