GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 22:15:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sylvilagus floridanus genome assembly, chromosome: 14.
OX463236.1:168683235-168683254
TCTAATTCAGAACATGTCAGCCCCCAAGTC168683235CTTTCCAGCAATCTCTGTTCGCTGCCAAGTCTTCCTCTTCCTCACCCAAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39929170-39929189
CTCAAACATATAAGAACTACGTGTTAATTC39929170CTTTCCAGCAATCTCTGTTCAAAGATATGTATATAATGATTCACATTTGT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36650776-36650795
CTCAAACATATAAGAACTACGTGCTAATTC36650776CTTTCCAGCAATCTCTGTTCAAAGATATTTATATAGTGATTCACATTTGT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40227089-40227108
CTCAAACATATAAGAACTACGTGTTAATTC40227089CTTTCCAGCAATCTCTGTTCAAAGATATGTATATAATGATTCACATTTGT
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39518284-39518303
CTCAAACATATAAGAACTACGTGTTAATTC39518284CTTTCCAGCAATCTCTGTTCAAAGATATGTATATAATGATTCACATTTGT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39076843-39076862
CTCAAACATATAAGAACTACGTGTTAATTC39076843CTTTCCAGCAATCTCTGTTCAAAGATATGTATATAATGATTCACATTTGT
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39538318-39538337
CTCAAACATATAAGAACTACGTGCTAATTC39538318CTTTCCAGCAATCTCTGTTCAAAGATATGTATATAATGATTCACATTTGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40377911-40377930
CTCAAACATATAAGAACTACGTGTTAATTC40377911CTTTCCAGCAATCTCTGTTCAAAGATGTATATAATGATTCACATTTGTAG
Andrena dorsata genome assembly, chromosome: 3.
OV815489.1:19736419-19736438
GCTTTGGACTATGGTGGCAAAATATTTATG19736419CTTTCCAGCAATCTCTGTTCCAAGTGAACGATTATTTTCTAAAGGTAGAC
Xestia rhomboidea genome assembly, chromosome: 14.
OY970770.1:8588678-8588697
AACGTACCATTACACATTGTTTTTTTAATC8588678CTTTCCAGCAATCTCTGTTCCAAACAGGTTTAACTTTAAGTAAATACTCT
Psittacula echo genome assembly, chromosome: 3.
OY725422.1:124974045-124974064
TATGAATCATCTGGCATCTATTCAAATAAC124974045GAACAGAGATTGCTGGAAAGAAGGGGAAATCTCCAGGGCATGAGCCAAGA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6655243-6655262
ACAAATGTGAATCATTATATACATATCTTT6655243GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTGTATGTTTGAG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6901867-6901886
TCAAATGTGAATCATTATATACATATCTTT6901867GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTATATGTTTGAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6325601-6325620
ACAAATGTGAATCATTATATACATATCTTT6325601GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTGTATGTTTGAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6814616-6814635
ACAAATGTGAATCATTATATACATATCTTT6814616GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTGTATGTTTGAG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6613002-6613021
TCAAATGTGAATCATTATATACATATCTTT6613002GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTATATGTTTGAG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7010955-7010974
ACAAATGTGGATCATTATATACAAATTTTT7010955GAACAGAGATTGCTGGAAAGGAATTAGCTCGTAGTTCTTATATGTTTGAG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5367607-5367626
ACAAATGTGAATCATTATATACATATTTTT5367607GAACAGAGATTGCTGGAAAGGAATTAGCACGTAGTTCTTATACGTTTGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTTCCAGCAATCTCTGTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTTCCAGCAATCTCTGTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.336 | 0.328 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTCCAGCAATCTCTGTTC&k=0&no_gap=0&offset=0&limit=50
0.471 | 0.135 | search_minus_done; http://172.18.8.135:50400/match?q=GAACAGAGATTGCTGGAAAG&k=0&no_gap=0&offset=0&limit=40
0.476 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).